##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935944.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 311197 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10201255153488 33.0 31.0 34.0 30.0 34.0 2 32.21428869815583 33.0 31.0 34.0 30.0 34.0 3 32.28645199021842 34.0 31.0 34.0 30.0 34.0 4 35.841679065029545 37.0 35.0 37.0 35.0 37.0 5 35.863411279671716 37.0 35.0 37.0 35.0 37.0 6 35.88200721729323 37.0 35.0 37.0 35.0 37.0 7 36.04249719630973 37.0 35.0 37.0 35.0 37.0 8 35.64521187543582 37.0 35.0 37.0 33.0 37.0 9 37.43709290256654 39.0 37.0 39.0 34.0 39.0 10 37.24003444763285 39.0 37.0 39.0 34.0 39.0 11 37.201293714271024 39.0 37.0 39.0 34.0 39.0 12 37.09535117626455 39.0 37.0 39.0 34.0 39.0 13 36.99935410688406 39.0 37.0 39.0 33.0 39.0 14 38.14101357018223 40.0 37.0 41.0 33.0 41.0 15 38.29096038843562 40.0 37.0 41.0 34.0 41.0 16 38.42998165149407 40.0 37.0 41.0 34.0 41.0 17 38.38852238292785 40.0 37.0 41.0 34.0 41.0 18 38.39991388091787 40.0 37.0 41.0 34.0 41.0 19 38.41957024007301 40.0 37.0 41.0 34.0 41.0 20 38.20989598228775 40.0 37.0 41.0 34.0 41.0 21 38.21546158864 40.0 37.0 41.0 34.0 41.0 22 38.217010446758806 40.0 37.0 41.0 34.0 41.0 23 38.22177913026154 40.0 37.0 41.0 34.0 41.0 24 38.13556364617911 40.0 37.0 41.0 34.0 41.0 25 38.083262370781206 40.0 36.0 41.0 34.0 41.0 26 37.90308711202229 40.0 36.0 41.0 34.0 41.0 27 37.82445524860458 40.0 36.0 41.0 33.0 41.0 28 37.82159211046379 40.0 36.0 41.0 33.0 41.0 29 37.81821482854912 40.0 36.0 41.0 33.0 41.0 30 37.742208311776785 40.0 36.0 41.0 33.0 41.0 31 37.78789641288316 40.0 36.0 41.0 33.0 41.0 32 37.672827822890326 40.0 36.0 41.0 33.0 41.0 33 37.59793956882618 40.0 36.0 41.0 33.0 41.0 34 37.5449538395293 40.0 36.0 41.0 33.0 41.0 35 37.536187688184654 40.0 36.0 41.0 33.0 41.0 36 37.48484079216702 40.0 35.0 41.0 33.0 41.0 37 37.42978242078169 40.0 35.0 41.0 33.0 41.0 38 37.33887537476261 40.0 35.0 41.0 33.0 41.0 39 37.3017059933097 40.0 35.0 41.0 33.0 41.0 40 37.165965610208325 39.0 35.0 41.0 32.0 41.0 41 37.07912672680006 39.0 35.0 41.0 32.0 41.0 42 37.06715681706443 39.0 35.0 41.0 32.0 41.0 43 36.988695263771824 39.0 35.0 41.0 32.0 41.0 44 36.93070948627397 39.0 35.0 41.0 32.0 41.0 45 36.8082050919514 39.0 35.0 41.0 31.0 41.0 46 36.70504535712105 39.0 35.0 41.0 31.0 41.0 47 36.60141325269845 39.0 35.0 41.0 31.0 41.0 48 36.567370508070454 39.0 35.0 41.0 31.0 41.0 49 36.565015086906364 39.0 35.0 41.0 31.0 41.0 50 36.375119297422536 38.0 35.0 40.0 31.0 41.0 51 35.31905834567814 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 6.0 10 8.0 11 7.0 12 4.0 13 6.0 14 6.0 15 4.0 16 18.0 17 30.0 18 54.0 19 121.0 20 241.0 21 404.0 22 599.0 23 832.0 24 1182.0 25 1443.0 26 1926.0 27 2314.0 28 2688.0 29 3175.0 30 4074.0 31 5292.0 32 7113.0 33 9796.0 34 18948.0 35 27006.0 36 21362.0 37 32200.0 38 59803.0 39 110426.0 40 105.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.76811473118314 20.99923842453494 23.012432639132125 10.220214205149793 2 30.97105691892917 27.227768905227233 24.47613569539552 17.325038480448075 3 32.21978360973917 26.78303454082141 24.51212575956709 16.485056089872334 4 29.17187505020935 24.757950751453258 26.549741803423554 19.520432394913833 5 28.619170493288813 28.039473388239607 23.236727860487086 20.10462825798449 6 26.136820085026525 35.85349473163302 22.89032349283573 15.119361690504729 7 77.81566017667265 6.128593784644454 10.896955947518775 5.158790091164118 8 76.24495094747057 8.441919427243835 9.234022178877046 6.079107446408545 9 69.86764011221189 8.346160149358766 11.458015340764852 10.3281843976645 10 40.5193494795901 27.14229250281976 18.34015109400155 13.998206923588594 11 33.07743969254202 23.814175586525575 24.284938479484055 18.823446241448345 12 31.152613939080386 20.498912264578387 27.9263617579861 20.422112038355124 13 25.906098066498068 24.563540136955048 29.26474226936635 20.26561952718053 14 19.731231342204456 30.70209545721842 27.14293518253711 22.42373801804002 15 18.386745373509385 25.899349929465902 35.78729872074602 19.92660597627869 16 19.917287120377125 25.408342625410913 32.46721530091871 22.20715495329325 17 20.489593408676818 26.15738583598171 28.343782234404575 25.0092385209369 18 21.4651812196133 26.547813764271506 29.102144300876937 22.884860715238258 19 23.913148262997392 27.343451254350136 26.185342403686413 22.558058078966056 20 27.44338795039798 26.398712069846432 27.724238986879694 18.433660992875893 21 23.94014081112607 27.924755058692725 27.55746360022751 20.577640529953694 22 21.280089461016654 25.520490236088396 27.606307258746064 25.593113044148886 23 22.560628797835456 27.089271426138428 27.81807022561271 22.532029550413405 24 22.557415399248708 23.89933064907438 28.755739933225577 24.787514018451333 25 20.672757128121415 29.151630639112845 26.693702060109835 23.48191017265591 26 19.5564224590854 29.193726160599237 27.87334068130477 23.376510699010595 27 22.931133654887418 29.46911441948348 26.289456517897026 21.31029540773208 28 19.106546656940782 29.170589690774655 29.337365077426842 22.385498574857728 29 21.56865265410656 28.871100942489807 26.41156566419342 23.14868073921021 30 21.5872903659097 29.121103352538746 27.299749033570375 21.991857247981184 31 25.062580937476902 29.59989974196409 22.78331731989704 22.55420200066196 32 25.898064570031202 30.75800859262782 23.39097099265096 19.95295584469002 33 23.624585069907486 28.68247444544774 24.98417401196027 22.708766472684506 34 24.43243347461576 27.507977261991602 25.68855098217528 22.371038281217366 35 23.246689396106003 27.802003232678977 24.617846573071077 24.333460798143943 36 23.50568932219784 29.966227180853284 24.181145705132117 22.34693779181676 37 24.84021375527399 29.507032522807098 26.16831139117665 19.48444233074226 38 22.969694437928386 27.73741392108536 25.122671491049076 24.170220149937176 39 24.70139493632651 25.184047404055953 26.64228768272188 23.472269976895667 40 24.77626712339772 23.894831891052934 29.85375823031713 21.475142755232216 41 21.364280503989434 26.567736835509344 26.35500984906667 25.712972811434557 42 24.026581233109574 25.37267390109802 27.008293781752396 23.592451084040015 43 23.66346719280713 26.521785235718852 25.6361725852113 24.17857498626272 44 22.76532228781126 26.34922573161052 26.77917846251731 24.106273518060906 45 22.54681118391244 25.28848285812524 25.65673833616648 26.507967621795842 46 24.07317551261741 27.91479352307381 25.326079621590182 22.6859513427186 47 21.485104290851133 25.34793073198006 30.290780438114762 22.87618453905404 48 22.29102465640736 24.446572428397445 27.7470541168456 25.515348798349596 49 22.528173472109305 23.655112356481585 30.143606782841736 23.67310738856737 50 20.77365784374528 23.911862903562696 29.860827707207978 25.453651545484053 51 21.031372410402412 23.354338248762037 26.42538327811643 29.188906062719113 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 201.0 1 319.5 2 438.0 3 646.5 4 855.0 5 622.5 6 390.0 7 403.5 8 417.0 9 416.0 10 415.0 11 423.5 12 432.0 13 467.5 14 503.0 15 545.0 16 587.0 17 579.0 18 571.0 19 607.0 20 643.0 21 702.5 22 762.0 23 871.5 24 981.0 25 1350.0 26 2099.5 27 2480.0 28 2912.0 29 3344.0 30 3785.5 31 4227.0 32 4693.5 33 5160.0 34 6371.5 35 7583.0 36 8107.5 37 8632.0 38 9205.5 39 9779.0 40 11524.0 41 13269.0 42 15435.5 43 17602.0 44 20253.5 45 22905.0 46 28674.5 47 34444.0 48 33969.0 49 33494.0 50 32683.5 51 31873.0 52 27805.0 53 23737.0 54 20428.0 55 17119.0 56 15380.0 57 13641.0 58 13713.5 59 13786.0 60 12713.5 61 11641.0 62 11108.5 63 10576.0 64 8488.0 65 6400.0 66 5297.5 67 4195.0 68 3415.0 69 2635.0 70 2129.5 71 1624.0 72 1330.5 73 1037.0 74 747.0 75 379.5 76 302.0 77 205.0 78 108.0 79 127.0 80 146.0 81 95.5 82 45.0 83 37.5 84 30.0 85 19.0 86 8.0 87 5.0 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 311197.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.38845533029546 #Duplication Level Percentage of deduplicated Percentage of total 1 71.39788660364987 23.12467260939814 2 11.606981565429898 7.518644079029782 3 4.211149406798312 4.09177873353862 4 2.1659992363594114 2.8061347804912344 5 1.223998106422933 1.9821703997122697 6 0.8229986940176335 1.599339386284897 7 0.6349989915038506 1.4396645529773593 8 0.5099991900041589 1.3214468787149254 9 0.4869992265326655 1.4195837424997506 >10 6.773989241339032 46.925615092019946 >50 0.11299982053016099 2.3896164390058474 >100 0.04599992694148146 2.657792423215232 >500 0.0019999968235426724 0.48355887007803333 >1k 0.003999993647085345 2.239982013033944 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC 2084 0.6696722654781376 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG 1767 0.5678075302782482 No Hit GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 1640 0.5269973682265574 No Hit GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 1425 0.4579092986114905 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 808 0.25964260580918197 Illumina Single End Adapter 2 (95% over 21bp) CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT 685 0.22011780319219015 Illumina Single End Adapter 2 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGATGGCT 452 0.14524561612097803 No Hit GAATGACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCT 394 0.1266079043178437 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 388 0.1246798651657953 No Hit TCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 381 0.12243048615507218 Illumina Single End Adapter 2 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 327 0.10507813378663677 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.254822507929061 0.0 2 0.0 0.0 0.0 1.3297043351960334 0.0 3 0.0 0.0 0.0 1.8261744168484915 0.0 4 0.0 0.0 0.0 2.5408342625410913 0.0 5 0.0 0.0 0.0 4.81656314167553 0.0 6 0.0 0.0 0.0 5.716957425682124 0.0 7 0.0 0.0 0.0 6.706041510682944 0.0 8 0.0 0.0 0.0 8.287354955221291 0.0 9 0.0 0.0 0.0 8.804712127687607 0.0 10 0.0 0.0 0.0 10.565975893083802 0.0 11 0.0 0.0 0.0 12.218948126106614 0.0 12 0.0 0.0 0.0 14.23631975886657 0.0 13 3.2133985867473014E-4 0.0 0.0 14.8552203266741 0.0 14 3.2133985867473014E-4 0.0 0.0 15.105222736723041 0.0 15 3.2133985867473014E-4 0.0 0.0 15.648929777600683 0.0 16 3.2133985867473014E-4 0.0 0.0 16.60170245857126 0.0 17 3.2133985867473014E-4 0.0 0.0 17.640272881807988 0.0 18 3.2133985867473014E-4 0.0 0.0 18.834693136501958 0.0 19 6.426797173494603E-4 0.0 0.0 19.65539513555722 0.0 20 6.426797173494603E-4 0.0 0.0 20.33020883877415 0.0 21 6.426797173494603E-4 0.0 0.0 21.088570905246517 0.0 22 6.426797173494603E-4 0.0 0.0 21.991214568263832 0.0 23 6.426797173494603E-4 0.0 0.0 22.830232939263553 0.0 24 6.426797173494603E-4 0.0 0.0 23.497977165589642 0.0 25 6.426797173494603E-4 0.0 0.0 24.104345478908858 0.0 26 6.426797173494603E-4 0.0 0.0 24.611419775897584 0.0 27 6.426797173494603E-4 0.0 0.0 25.13423972596137 0.0 28 6.426797173494603E-4 0.0 0.0 25.660594414470577 0.0 29 6.426797173494603E-4 0.0 0.0 26.219083088847256 0.0 30 6.426797173494603E-4 0.0 0.0 26.855978688740574 0.0 31 6.426797173494603E-4 0.0 0.0 27.49158892919919 0.0 32 9.640195760241905E-4 0.0 0.0 28.06357387764021 0.0 33 9.640195760241905E-4 0.0 0.0 28.62334791145159 0.0 34 9.640195760241905E-4 0.0 0.0 29.165126913177183 0.0 35 9.640195760241905E-4 0.0 0.0 29.741289279780975 0.0 36 9.640195760241905E-4 0.0 0.0 30.328055861721033 0.0 37 9.640195760241905E-4 0.0 0.0 30.90261152903145 0.0 38 9.640195760241905E-4 0.0 0.0 31.45435206637596 0.0 39 9.640195760241905E-4 0.0 0.0 32.010912701600596 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCTCGA 30 2.160381E-6 45.000004 41 GTAAGTA 30 2.160381E-6 45.000004 10 GTCGCTA 20 7.025349E-4 45.0 20 GGTACAT 20 7.025349E-4 45.0 8 GTCGAAG 20 7.025349E-4 45.0 1 ATAGCGG 45 3.8198777E-10 45.0 2 AGGCGTC 35 1.2081182E-7 45.0 35 CGACAGG 20 7.025349E-4 45.0 2 ACGGGTA 25 3.884227E-5 45.0 5 CCCGTCT 20 7.025349E-4 45.0 40 TCGGAGT 20 7.025349E-4 45.0 27 ACCTACG 20 7.025349E-4 45.0 35 TACGAAT 80 0.0 45.0 12 CGCTAGG 20 7.025349E-4 45.0 2 TGCGAAG 20 7.025349E-4 45.0 1 TCGCTAT 20 7.025349E-4 45.0 21 CAGGCGT 35 1.2081182E-7 45.0 34 CGAATAT 80 0.0 45.0 14 CTCGCGG 20 7.025349E-4 45.0 2 TTAACGG 20 7.025349E-4 45.0 2 >>END_MODULE