SRR2935943.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935943.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	523003
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	1490	0.2848932032894649	No Hit
CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	1135	0.21701596357955882	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT	881	0.16845027657585138	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	666	0.12734152576562657	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	634	0.12122301401712801	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTAT	20	7.029758E-4	45.0	23
ATAGCCG	20	7.029758E-4	45.0	1
CTACGAT	20	7.029758E-4	45.0	30
TTCGGTA	20	7.029758E-4	45.0	22
CGGTCTA	35	1.2102282E-7	45.0	31
ATAACGG	35	1.2102282E-7	45.0	2
GCGCTAG	25	3.8878796E-5	45.0	1
TATCGCG	20	7.029758E-4	45.0	32
AATCCGG	30	2.163224E-6	44.999996	2
TAACGGG	80	0.0	42.1875	3
CACGGGT	55	6.002665E-11	40.909092	4
ATAGCGG	55	6.002665E-11	40.909092	2
CGCGCAT	55	6.002665E-11	40.909092	36
CCCGATG	50	1.0786607E-9	40.5	15
CGTTCGG	45	1.9248546E-8	40.000004	2
GTACGAG	45	1.9248546E-8	40.000004	1
TCGACGT	40	3.453406E-7	39.375	26
CGTATGG	70	0.0	38.571426	2
TAGAACG	35	6.2417603E-6	38.571426	1
GCGATAA	35	6.2417603E-6	38.571426	9