SRR2935941.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935941.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	426120
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGC	10690	2.5086830000938702	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	9474	2.223317375387215	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCG	9235	2.1672298882943775	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	2536	0.5951375199474327	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGGAGCTT	2070	0.4857786539003098	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCT	1913	0.4489345724209143	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTA	1507	0.353656247066554	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTC	1394	0.3271378954285178	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCT	1377	0.32314840889890173	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	769	0.180465596545574	No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT	709	0.1663850558528114	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	609	0.14291748803154042	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATG	497	0.1166338120717169	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTT	476	0.11170562282924999	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	60	0.0	45.000004	6
CGAACGC	60	0.0	45.000004	34
AATACGG	30	2.1622745E-6	45.000004	2
AACCGAT	25	3.8866594E-5	45.0	16
AGTCATT	20	7.028285E-4	45.0	40
GGTAAGT	25	3.8866594E-5	45.0	8
GAATGCG	20	7.028285E-4	45.0	1
CGTGCAT	20	7.028285E-4	45.0	38
TAGGTCG	20	7.028285E-4	45.0	1
CCGTGCA	20	7.028285E-4	45.0	37
TCGGATC	20	7.028285E-4	45.0	38
CCGTAAG	20	7.028285E-4	45.0	42
TTCGGAT	25	3.8866594E-5	45.0	37
ATAACGG	20	7.028285E-4	45.0	2
TGTCGCG	20	7.028285E-4	45.0	1
CCCATAC	25	3.8866594E-5	45.0	16
ATCGACG	25	3.8866594E-5	45.0	1
ATTTCCG	80	0.0	45.0	32
CGAATGC	255	0.0	44.11765	45
CGATGAA	1405	0.0	43.55872	19