SRR2935940.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935940.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	462519
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	1594	0.34463449069119323	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	1339	0.2895016204739697	TruSeq Adapter, Index 23 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT	918	0.19847833278200464	TruSeq Adapter, Index 20 (95% over 24bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGC	838	0.18118174604718942	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTC	793	0.17145241600885586	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCG	714	0.15437203660822582	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	493	0.10659021575329879	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	488	0.10550917908237283	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	479	0.10356331307470612	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	30	2.1626784E-6	45.000004	2
CATATCG	20	7.0289115E-4	45.0	16
GGTCGTT	20	7.0289115E-4	45.0	8
TTCACGG	25	3.887178E-5	45.0	2
TTCGTTA	20	7.0289115E-4	45.0	42
GCGTTAA	20	7.0289115E-4	45.0	34
CGTTAAT	20	7.0289115E-4	45.0	44
CGTTAAC	20	7.0289115E-4	45.0	35
TCGGACG	20	7.0289115E-4	45.0	2
CTACGGT	25	3.887178E-5	45.0	28
TACGACC	20	7.0289115E-4	45.0	35
ACGTGCG	20	7.0289115E-4	45.0	1
ACTACGG	20	7.0289115E-4	45.0	27
TGTAGCG	20	7.0289115E-4	45.0	1
TTACGCG	20	7.0289115E-4	45.0	1
TTACGAC	20	7.0289115E-4	45.0	34
ACGTAAG	20	7.0289115E-4	45.0	1
TATACGG	20	7.0289115E-4	45.0	2
GCATCGT	20	7.0289115E-4	45.0	25
GGCTAAT	25	3.887178E-5	45.0	8