##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935940.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 462519 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.126844518819766 33.0 31.0 34.0 30.0 34.0 2 32.237283225121566 34.0 31.0 34.0 30.0 34.0 3 32.28966810012129 34.0 31.0 34.0 30.0 34.0 4 35.85102882259972 37.0 35.0 37.0 35.0 37.0 5 35.8719295855954 37.0 35.0 37.0 35.0 37.0 6 35.89085421355663 37.0 35.0 37.0 35.0 37.0 7 36.03392293073366 37.0 35.0 37.0 35.0 37.0 8 35.66158147016663 37.0 35.0 37.0 35.0 37.0 9 37.394385960360545 39.0 37.0 39.0 34.0 39.0 10 37.22341136256024 39.0 37.0 39.0 34.0 39.0 11 37.20982921782673 39.0 37.0 39.0 34.0 39.0 12 37.13448312393653 39.0 37.0 39.0 34.0 39.0 13 37.12306737669155 39.0 37.0 39.0 34.0 39.0 14 38.33237337276955 40.0 38.0 41.0 34.0 41.0 15 38.44980854840558 40.0 38.0 41.0 34.0 41.0 16 38.54270635368493 40.0 38.0 41.0 34.0 41.0 17 38.49703687848499 40.0 38.0 41.0 34.0 41.0 18 38.48176831654484 40.0 38.0 41.0 34.0 41.0 19 38.50677918096338 40.0 38.0 41.0 34.0 41.0 20 38.356930201786305 40.0 37.0 41.0 34.0 41.0 21 38.34883107504773 40.0 37.0 41.0 34.0 41.0 22 38.32554338308264 40.0 37.0 41.0 34.0 41.0 23 38.337363438042544 40.0 37.0 41.0 34.0 41.0 24 38.24635960901065 40.0 37.0 41.0 34.0 41.0 25 38.157044359258755 40.0 37.0 41.0 34.0 41.0 26 38.01249029769588 40.0 37.0 41.0 34.0 41.0 27 37.96352582272296 40.0 37.0 41.0 33.0 41.0 28 37.91713853917353 40.0 37.0 41.0 33.0 41.0 29 37.93485456813666 40.0 37.0 41.0 33.0 41.0 30 37.8270211602118 40.0 36.0 41.0 33.0 41.0 31 37.850568300977905 40.0 36.0 41.0 33.0 41.0 32 37.821311124515965 40.0 36.0 41.0 33.0 41.0 33 37.783204581865824 40.0 36.0 41.0 33.0 41.0 34 37.73401092711867 40.0 36.0 41.0 33.0 41.0 35 37.71971746025569 40.0 36.0 41.0 33.0 41.0 36 37.646604788127625 40.0 36.0 41.0 33.0 41.0 37 37.61158568620965 40.0 36.0 41.0 33.0 41.0 38 37.53841031395467 40.0 36.0 41.0 33.0 41.0 39 37.46894073540763 40.0 36.0 41.0 33.0 41.0 40 37.36419909236161 40.0 35.0 41.0 33.0 41.0 41 37.27501789115691 40.0 35.0 41.0 32.0 41.0 42 37.23949070200359 40.0 35.0 41.0 32.0 41.0 43 37.16962762610833 40.0 35.0 41.0 32.0 41.0 44 37.066047016446895 39.0 35.0 41.0 32.0 41.0 45 36.951031200880394 39.0 35.0 41.0 32.0 41.0 46 36.86745193170443 39.0 35.0 41.0 31.0 41.0 47 36.799582287430354 39.0 35.0 41.0 31.0 41.0 48 36.72625989418813 39.0 35.0 41.0 31.0 41.0 49 36.65135486325967 39.0 35.0 41.0 31.0 41.0 50 36.48113050490899 39.0 35.0 41.0 31.0 41.0 51 35.47589612534836 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 7.0 10 8.0 11 11.0 12 8.0 13 13.0 14 13.0 15 13.0 16 31.0 17 43.0 18 85.0 19 184.0 20 279.0 21 519.0 22 771.0 23 1185.0 24 1514.0 25 2114.0 26 2810.0 27 3439.0 28 3971.0 29 4816.0 30 6101.0 31 7509.0 32 10066.0 33 13966.0 34 26488.0 35 34111.0 36 31806.0 37 48125.0 38 90713.0 39 171646.0 40 146.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.85865661734977 20.427917555819327 23.056566324842873 10.656859501988027 2 32.1294908965902 25.419496280152813 23.789292980396482 18.66171984286051 3 32.44558601916894 26.112873200884724 24.485048181804423 16.956492598141914 4 29.656295200845804 24.660176122494427 25.63224429699104 20.051284379668726 5 26.89511133596674 29.519003543638206 23.091808120315058 20.494077000079997 6 25.923907990806867 35.906849232139656 23.33071722458969 14.838525552463791 7 78.22662420354624 6.918850901260272 9.456260175257665 5.398264719935829 8 77.36157865947129 7.797733714723071 8.698453468938574 6.142234156867069 9 70.53656174124738 9.553553475641001 11.379208205500747 8.530676577610866 10 38.83018859765761 28.290081056129583 17.90348072187305 14.976249624339758 11 30.879812504999794 26.664418110391143 23.406605998888693 19.04916338572037 12 29.629053076738472 22.646853426561936 27.814208713587984 19.90988478311161 13 26.064010343358866 24.595530129573056 28.902380226542046 20.43807930052603 14 20.32003009606092 29.32009279618783 27.059861324615852 23.300015783135393 15 19.011110894903776 27.298554221556305 33.18523130941648 20.505103574123442 16 21.32409695601694 27.23758375331608 30.64371409606957 20.79460519459741 17 21.435443733122312 26.560422382648063 27.4942218589939 24.50991202523572 18 22.926625716997574 27.398009595281493 28.09225134535014 21.5831133423708 19 25.191181335253255 26.79479113290481 26.186599901841873 21.827427630000066 20 27.053158897256115 26.19654543921439 27.36471366581697 19.385581997712524 21 24.875086212674507 26.89684099464022 27.54762507053764 20.68044772214763 22 22.293138227834962 26.563016870658284 26.68474159980455 24.4591033017022 23 23.06326875220261 27.100292096108486 27.468709393560047 22.367729758128853 24 23.11472609773869 24.906003861462988 28.094629626026173 23.88464041477215 25 21.780726845816066 28.180031523029324 26.267461444827134 23.771780186327483 26 22.033905634146922 28.03949675580895 26.61814974087551 23.30844786916862 27 24.635960901065687 27.732482341265978 26.366268196549765 21.26528856111857 28 20.637854877313146 28.521422903707737 28.022632583742507 22.818089635236607 29 23.790806431735778 26.86657196785429 26.20022096389554 23.14240063651439 30 23.747348757564556 26.288433556243096 26.210815123270613 23.75340256292174 31 23.274719525035728 28.835572160278822 24.33910823122942 23.55060008345603 32 24.949461535634214 27.51411293373894 24.746875263502687 22.789550267124163 33 22.945868169740056 28.10954793208495 24.787089827661134 24.15749407051386 34 21.499224896706945 26.876949919895182 28.263055139356435 23.360770044041434 35 23.13267130647606 24.729578676767876 26.965378719576925 25.17237129717914 36 22.880573554816127 29.522679068319356 25.103184950239882 22.493562426624635 37 22.555830138869972 28.44423688540363 27.43173793941438 21.56819503631202 38 20.80865867131945 27.469574222896785 26.031363035896902 25.690404069886856 39 23.16985896795591 25.06188934941051 26.735334116003884 25.0329175666297 40 22.922950192316424 24.412186310184016 29.90277156181692 22.762091935682644 41 20.12220038528147 27.06396926396537 28.26932515204781 24.544505198705348 42 22.192385610104665 27.160830149680336 28.14435731288877 22.50242692732623 43 23.80637335979711 26.05665929399657 26.327999498398984 23.808967847807335 44 22.376594258830448 26.259245566128094 26.23373310069424 25.130427074347217 45 22.28211165379152 23.703674876059146 27.128182842218372 26.886030627930964 46 22.244707784977482 26.719118565939993 26.499884329076213 24.536289320006315 47 21.723431902256987 25.45668394163267 29.989686910159367 22.830197245950977 48 21.528196679487763 24.924165277534545 28.45612828878381 25.09150975419388 49 22.18503456074237 24.173493413243563 29.696077350335877 23.945394675678187 50 20.592451337134257 24.29240744704542 29.11880376806142 25.996337447758904 51 20.371271234262807 23.83793963058815 27.41746825535816 28.373320879790885 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 211.0 1 439.0 2 667.0 3 913.0 4 1159.0 5 866.5 6 574.0 7 594.5 8 615.0 9 588.0 10 561.0 11 590.0 12 619.0 13 694.5 14 770.0 15 810.5 16 851.0 17 861.5 18 872.0 19 931.0 20 990.0 21 1054.0 22 1118.0 23 1283.0 24 1448.0 25 2221.0 26 3580.5 27 4167.0 28 5234.0 29 6301.0 30 6814.5 31 7328.0 32 7851.5 33 8375.0 34 9710.5 35 11046.0 36 12305.5 37 13565.0 38 14799.5 39 16034.0 40 18183.0 41 20332.0 42 22696.5 43 25061.0 44 27885.5 45 30710.0 46 35898.5 47 41087.0 48 44140.0 49 47193.0 50 46333.5 51 45474.0 52 40092.0 53 34710.0 54 31050.5 55 27391.0 56 25731.0 57 24071.0 58 22531.5 59 20992.0 60 20827.0 61 20662.0 62 19014.5 63 17367.0 64 13635.5 65 9904.0 66 8285.5 67 6667.0 68 5343.0 69 4019.0 70 3589.0 71 3159.0 72 2326.0 73 1493.0 74 1221.5 75 792.0 76 634.0 77 386.0 78 138.0 79 151.0 80 164.0 81 110.0 82 56.0 83 33.0 84 10.0 85 6.5 86 3.0 87 2.5 88 2.0 89 2.5 90 3.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 462519.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.22344168745217 #Duplication Level Percentage of deduplicated Percentage of total 1 71.2563792834078 22.24869403414458 2 10.9026359364911 6.8083563480510065 3 3.962895509647884 3.712057105768702 4 1.9811079574739945 2.47428035146947 5 1.2695977115401254 1.9820605056397913 6 0.871053786445431 1.6318378264627997 7 0.7191069480089034 1.5717095700738388 8 0.6449441143413324 1.6109899956641658 9 0.5866184069110765 1.6484621058876678 >10 7.607598690989445 48.709179242077006 >50 0.13717344286080918 2.8567353007953447 >100 0.056689024855742565 3.391676631503446 >500 0.002799458017567534 0.7130365858253813 >1k 0.001399729008783767 0.6409243966367894 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 1594 0.34463449069119323 TruSeq Adapter, Index 23 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 1339 0.2895016204739697 TruSeq Adapter, Index 23 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT 918 0.19847833278200464 TruSeq Adapter, Index 20 (95% over 24bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGC 838 0.18118174604718942 No Hit GAATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTC 793 0.17145241600885586 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCG 714 0.15437203660822582 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 493 0.10659021575329879 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 488 0.10550917908237283 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 479 0.10356331307470612 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.207991455486153 0.0 2 0.0 0.0 0.0 1.0533621321502469 0.0 3 0.0 0.0 0.0 1.4600481277525896 0.0 4 0.0 0.0 0.0 2.007917512577862 0.0 5 0.0 0.0 0.0 3.681362279171234 0.0 6 0.0 0.0 0.0 4.462735584916511 0.0 7 0.0 0.0 0.0 5.236325426631122 0.0 8 0.0 0.0 0.0 6.436492338693113 0.0 9 0.0 0.0 0.0 6.863934238377234 0.0 10 0.0 0.0 0.0 8.05804734508204 0.0 11 0.0 0.0 0.0 9.507933728127925 0.0 12 0.0 0.0 0.0 10.81577189261414 0.0 13 0.0 0.0 0.0 11.300508735857338 0.0 14 0.0 0.0 0.0 11.516283655374158 0.0 15 0.0 0.0 0.0 11.955616958438464 0.0 16 0.0 0.0 0.0 12.799041769094892 0.0 17 0.0 0.0 0.0 13.701491181983876 0.0 18 0.0 0.0 0.0 14.673775563814676 0.0 19 0.0 0.0 0.0 15.284345075553652 0.0 20 2.1620733418519023E-4 0.0 0.0 15.91653532071115 0.0 21 2.1620733418519023E-4 0.0 0.0 16.630884352859017 0.0 22 2.1620733418519023E-4 0.0 0.0 17.39625831587459 0.0 23 2.1620733418519023E-4 0.0 0.0 18.11687736071383 0.0 24 2.1620733418519023E-4 0.0 0.0 18.695664394327583 0.0 25 2.1620733418519023E-4 0.0 0.0 19.23077754643593 0.0 26 2.1620733418519023E-4 0.0 0.0 19.706866096311717 0.0 27 2.1620733418519023E-4 0.0 0.0 20.204142964937656 0.0 28 2.1620733418519023E-4 0.0 0.0 20.708122260923336 0.0 29 2.1620733418519023E-4 0.0 0.0 21.183778396130755 0.0 30 2.1620733418519023E-4 0.0 0.0 21.751322648366877 0.0 31 4.3241466837038047E-4 0.0 0.0 22.280598202452225 0.0 32 4.3241466837038047E-4 0.0 0.0 22.807063061193162 0.0 33 6.486220025555707E-4 0.0 0.0 23.324231004564137 0.0 34 6.486220025555707E-4 0.0 0.0 23.823237531863555 0.0 35 6.486220025555707E-4 0.0 0.0 24.327649242517605 0.0 36 8.648293367407609E-4 0.0 0.0 24.854546515926913 0.0 37 8.648293367407609E-4 0.0 0.0 25.36803893461674 0.0 38 8.648293367407609E-4 0.0 0.0 25.866180632579418 0.0 39 8.648293367407609E-4 0.0 0.0 26.37361924591206 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTACGG 30 2.1626784E-6 45.000004 2 CATATCG 20 7.0289115E-4 45.0 16 GGTCGTT 20 7.0289115E-4 45.0 8 TTCACGG 25 3.887178E-5 45.0 2 TTCGTTA 20 7.0289115E-4 45.0 42 GCGTTAA 20 7.0289115E-4 45.0 34 CGTTAAT 20 7.0289115E-4 45.0 44 CGTTAAC 20 7.0289115E-4 45.0 35 TCGGACG 20 7.0289115E-4 45.0 2 CTACGGT 25 3.887178E-5 45.0 28 TACGACC 20 7.0289115E-4 45.0 35 ACGTGCG 20 7.0289115E-4 45.0 1 ACTACGG 20 7.0289115E-4 45.0 27 TGTAGCG 20 7.0289115E-4 45.0 1 TTACGCG 20 7.0289115E-4 45.0 1 TTACGAC 20 7.0289115E-4 45.0 34 ACGTAAG 20 7.0289115E-4 45.0 1 TATACGG 20 7.0289115E-4 45.0 2 GCATCGT 20 7.0289115E-4 45.0 25 GGCTAAT 25 3.887178E-5 45.0 8 >>END_MODULE