##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935939.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 843773 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17915244977026 33.0 31.0 34.0 30.0 34.0 2 32.2951255847248 34.0 31.0 34.0 30.0 34.0 3 32.351237832924255 34.0 31.0 34.0 30.0 34.0 4 35.88367605979333 37.0 35.0 37.0 35.0 37.0 5 35.90089159051072 37.0 35.0 37.0 35.0 37.0 6 35.90887122484365 37.0 35.0 37.0 35.0 37.0 7 36.0672100197565 37.0 35.0 37.0 35.0 37.0 8 35.79071740859212 37.0 35.0 37.0 35.0 37.0 9 37.52238220469249 39.0 37.0 39.0 35.0 39.0 10 37.20387236851618 39.0 37.0 39.0 34.0 39.0 11 37.17132925561733 39.0 37.0 39.0 34.0 39.0 12 37.08273433731584 39.0 37.0 39.0 34.0 39.0 13 37.04023831054087 39.0 37.0 39.0 33.0 39.0 14 38.12471363743566 40.0 37.0 41.0 33.0 41.0 15 38.31131595820203 40.0 38.0 41.0 33.0 41.0 16 38.44120041764788 40.0 38.0 41.0 34.0 41.0 17 38.4302555308122 40.0 38.0 41.0 34.0 41.0 18 38.42464501708398 40.0 37.0 41.0 34.0 41.0 19 38.43291145841358 40.0 37.0 41.0 34.0 41.0 20 38.282745477752904 40.0 37.0 41.0 34.0 41.0 21 38.268512976831445 40.0 37.0 41.0 34.0 41.0 22 38.27183614550359 40.0 37.0 41.0 34.0 41.0 23 38.28772430499672 40.0 37.0 41.0 34.0 41.0 24 38.20449575893042 40.0 37.0 41.0 34.0 41.0 25 38.12569968463082 40.0 37.0 41.0 34.0 41.0 26 37.98897570792144 40.0 36.0 41.0 34.0 41.0 27 37.950173802669674 40.0 36.0 41.0 34.0 41.0 28 37.930462339989546 40.0 36.0 41.0 34.0 41.0 29 37.91705589062461 40.0 36.0 41.0 34.0 41.0 30 37.808747139337235 40.0 36.0 41.0 33.0 41.0 31 37.829063029985555 40.0 36.0 41.0 33.0 41.0 32 37.79645828913701 40.0 36.0 41.0 33.0 41.0 33 37.76996301137865 40.0 36.0 41.0 33.0 41.0 34 37.685395242559316 40.0 36.0 41.0 33.0 41.0 35 37.675916389834704 40.0 36.0 41.0 33.0 41.0 36 37.60556334464364 40.0 36.0 41.0 33.0 41.0 37 37.576117036217084 40.0 36.0 41.0 33.0 41.0 38 37.512974461140615 40.0 35.0 41.0 33.0 41.0 39 37.46059662966224 40.0 35.0 41.0 33.0 41.0 40 37.360964382600535 40.0 35.0 41.0 33.0 41.0 41 37.254020927429536 40.0 35.0 41.0 33.0 41.0 42 37.255146822664386 40.0 35.0 41.0 33.0 41.0 43 37.203802444496326 39.0 35.0 41.0 33.0 41.0 44 37.13161004203737 39.0 35.0 41.0 32.0 41.0 45 37.02789375815534 39.0 35.0 41.0 32.0 41.0 46 36.9913033481754 39.0 35.0 41.0 32.0 41.0 47 36.95401606830273 39.0 35.0 41.0 32.0 41.0 48 36.887897574347605 39.0 35.0 41.0 32.0 41.0 49 36.8266571696416 39.0 35.0 41.0 32.0 41.0 50 36.71690608730073 39.0 35.0 41.0 31.0 41.0 51 35.76838083228546 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 13.0 9 16.0 10 29.0 11 21.0 12 18.0 13 21.0 14 26.0 15 42.0 16 81.0 17 111.0 18 206.0 19 325.0 20 521.0 21 794.0 22 1233.0 23 1829.0 24 2531.0 25 3675.0 26 4946.0 27 5995.0 28 7200.0 29 8606.0 30 10947.0 31 13940.0 32 18537.0 33 27455.0 34 52602.0 35 60713.0 36 56438.0 37 86472.0 38 160984.0 39 317112.0 40 331.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.520677954852786 21.821982926687628 24.993452030344653 10.663887088114931 2 32.75703299347099 24.38001690028005 24.974608099571803 17.888342006677153 3 33.02760339570003 24.04675191076273 25.40043352892306 17.52521116461418 4 29.41004274846434 25.3735305585744 25.577021307863607 19.63940538509765 5 26.04290490451816 29.440975238600902 24.158274796657395 20.357845060223543 6 26.734441609295388 34.35651531869354 23.59354944991129 15.315493622099781 7 80.59335864029781 6.4114400437084385 7.996582019097554 4.998619296896203 8 81.36027106816644 5.828463342628883 7.634399299337619 5.176866289867061 9 75.24156378552051 7.8434602671571625 10.118835279156835 6.79614066816549 10 41.76869845325698 25.67657414968244 17.522366797705068 15.032360599355513 11 30.972666819156338 26.47394500653612 23.423598527092 19.129789647215542 12 29.91017726331608 22.040880663401175 27.848485315363252 20.20045675791949 13 26.09647381463972 22.759675884390706 29.737026427724047 21.40682387324553 14 20.261373615889582 26.550979943657833 30.12670469427204 23.06094174618055 15 20.289935800268555 26.30861617994413 32.70204189989488 20.699406119892437 16 24.312818732052342 25.900686559062684 29.15867182287179 20.62782288601318 17 23.574231457986922 26.31928255585329 27.381772111693547 22.724713874466236 18 24.07389191168715 26.67364326661318 28.074968030501097 21.17749679119858 19 25.060294652708727 27.77547989802945 26.035912502533265 21.128312946728563 20 25.361797545074328 27.912246540242457 27.015559872145705 19.710396042537507 21 24.58552240946321 27.007974893721414 28.49628987891293 19.910212817902444 22 23.379510840000805 24.716718833145883 29.17206405040218 22.73170627645113 23 23.33269730128838 25.305858329195175 29.45543410372221 21.906010265794237 24 23.236462887530177 25.48552750562059 28.530066735958602 22.74794287089063 25 23.315038523394325 26.834349996977856 26.25457320867105 23.59603827095676 26 21.28096063751744 27.830233961029805 26.47050806318761 24.41829733826515 27 22.39251552253983 27.310188877814294 28.031354404561416 22.26594119508446 28 20.099126186782463 28.32681301724516 27.347047132344837 24.227013663627538 29 22.37912329500944 26.28029102614092 27.397416129693653 23.943169549155993 30 24.015226844186767 25.55557004075741 27.611691770179895 22.817511344875932 31 23.07314882083214 28.07567912222837 25.701699390712907 23.149472666226583 32 24.494621183659586 27.274515776162545 25.22906042264922 23.00180261752865 33 24.33498109088582 26.96898336400904 26.502033129763575 22.19400241534157 34 21.37731356656352 26.921932794720853 28.360708389578715 23.340045249136914 35 21.856826421324218 26.475367189990674 27.420052549678648 24.247753839006464 36 23.822639501382483 28.299198955169224 26.13748010424605 21.740681439202252 37 22.832088725285118 28.938470417991567 26.919325458387505 21.310115398335807 38 22.134626256113908 27.208621276101514 27.242398133147184 23.414354334637398 39 23.026927858559116 25.493586545196393 27.46508835907288 24.014397237171607 40 23.320253196061024 24.64952066491817 29.93980608528597 22.09042005373483 41 21.243272775971736 26.06720053853347 28.577354335822548 24.112172349672246 42 22.296636654645265 25.417855276241358 28.650952329595757 23.63455573951762 43 22.646493784465726 25.14325535422442 28.19182410435034 24.018426756959514 44 22.581784437283485 25.290925402922348 27.109898041297836 25.017392118496325 45 21.97557873977954 24.38890554687102 27.07718782184308 26.558327891506366 46 22.127041277689617 26.167227441503815 27.38414241745114 24.32158886335543 47 20.74894551022609 25.93778184416899 29.970620060134657 23.342652585470265 48 20.98289468850034 25.144084961239578 29.323763618888016 24.54925673137206 49 22.246267657296453 24.929453774889694 29.134613219432243 23.689665348381613 50 20.51262602619425 24.158393311945275 29.774832804557622 25.55414785730285 51 19.940671246887494 24.540723630644734 28.484438350124975 27.0341667723428 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 269.0 1 632.5 2 996.0 3 1869.5 4 2743.0 5 1911.0 6 1079.0 7 1118.5 8 1158.0 9 1138.5 10 1119.0 11 1082.5 12 1046.0 13 1088.5 14 1131.0 15 1141.0 16 1151.0 17 1294.0 18 1437.0 19 1592.5 20 1748.0 21 2126.5 22 2505.0 23 2611.0 24 2717.0 25 3603.0 26 5989.5 27 7490.0 28 9217.5 29 10945.0 30 12766.5 31 14588.0 32 16767.0 33 18946.0 34 22468.0 35 25990.0 36 26746.0 37 27502.0 38 29272.5 39 31043.0 40 33639.5 41 36236.0 42 40452.0 43 44668.0 44 48730.0 45 52792.0 46 59348.0 47 65904.0 48 72662.5 49 79421.0 50 79019.0 51 78617.0 52 70731.5 53 62846.0 54 56541.5 55 50237.0 56 48684.5 57 47132.0 58 45071.0 59 43010.0 60 40443.5 61 37877.0 62 33401.0 63 28925.0 64 25062.0 65 21199.0 66 17570.5 67 13942.0 68 11571.0 69 9200.0 70 7281.5 71 5363.0 72 4288.5 73 3214.0 74 2426.5 75 1186.5 76 734.0 77 541.0 78 348.0 79 271.5 80 195.0 81 173.0 82 151.0 83 84.0 84 17.0 85 11.0 86 5.0 87 3.5 88 2.0 89 2.5 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 843773.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.336873645163365 #Duplication Level Percentage of deduplicated Percentage of total 1 70.59460098628165 20.710248891652697 2 10.811949430702104 6.343775886128071 3 3.8547045090167313 3.39254937361396 4 1.9163911531864501 2.2488370046295922 5 1.2426439527708544 1.8227644314182456 6 0.9315916728362504 1.639799231693007 7 0.7524827027682364 1.545284297989794 8 0.6451910071437202 1.514230964285681 9 0.5669417069231614 1.4969067498160222 >10 8.51151082273059 53.32375619827806 >50 0.12051699905351189 2.339842777081955 >100 0.04698120244035567 2.452861845153643 >500 0.0028597253659346927 0.5336946055149601 >1k 0.0016341287805341099 0.6354477427442888 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC 1540 0.18251354333452244 RNA PCR Primer, Index 27 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1418 0.16805467821321612 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1216 0.14411459006154498 No Hit CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC 1128 0.1336852447281437 RNA PCR Primer, Index 38 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGCT 858 0.1016861170006625 RNA PCR Primer, Index 38 (95% over 24bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 854 0.10121205584914426 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.740611515182401E-4 0.0 0.0 0.10547860621280843 0.0 2 4.740611515182401E-4 0.0 0.0 0.5464739924126513 0.0 3 4.740611515182401E-4 0.0 0.0 0.8208368838538327 0.0 4 4.740611515182401E-4 0.0 0.0 1.233151570386822 0.0 5 4.740611515182401E-4 0.0 0.0 2.4234006065612435 0.0 6 4.740611515182401E-4 0.0 0.0 3.152980718747815 0.0 7 4.740611515182401E-4 0.0 0.0 3.807422138418745 0.0 8 4.740611515182401E-4 0.0 0.0 4.7857658398645135 0.0 9 4.740611515182401E-4 0.0 0.0 5.158496420245729 0.0 10 4.740611515182401E-4 0.0 0.0 6.002680815811836 0.0 11 4.740611515182401E-4 0.0 0.0 7.261905749532161 0.0 12 5.925764393978001E-4 0.0 0.0 8.225909101144502 0.0 13 5.925764393978001E-4 0.0 0.0 8.628268503495608 0.0 14 7.110917272773601E-4 0.0 0.0 8.797271304011861 0.0 15 7.110917272773601E-4 0.0 0.0 9.117499611862431 0.0 16 7.110917272773601E-4 0.0 0.0 9.735556838154338 0.0 17 7.110917272773601E-4 0.0 0.0 10.444041229098348 0.0 18 7.110917272773601E-4 0.0 0.0 11.20301313267905 0.0 19 8.296070151569202E-4 0.0 0.0 11.69319236334891 0.0 20 9.481223030364802E-4 0.0 0.0 12.19154914888246 0.0 21 0.0010666375909160401 0.0 0.0 12.817309868886538 0.0 22 0.0011851528787956002 0.0 0.0 13.476017838921132 0.0 23 0.0013036681666751602 0.0 0.0 14.091349213591807 0.0 24 0.0013036681666751602 0.0 0.0 14.603809318383025 0.0 25 0.0013036681666751602 0.0 0.0 15.050967499552605 0.0 26 0.0013036681666751602 0.0 0.0 15.455815722949183 0.0 27 0.0014221834545547203 0.0 0.0 15.95215774858878 0.0 28 0.0014221834545547203 0.0 0.0 16.397893746303804 0.0 29 0.0014221834545547203 0.0 0.0 16.88096205970089 0.0 30 0.0014221834545547203 0.0 0.0 17.466072035962277 0.0 31 0.0014221834545547203 0.0 0.0 17.954947598465463 0.0 32 0.0014221834545547203 0.0 0.0 18.429482811135223 0.0 33 0.0014221834545547203 0.0 0.0 18.88007793565331 0.0 34 0.0014221834545547203 0.0 0.0 19.33505812582294 0.0 35 0.0014221834545547203 0.0 0.0 19.847873776477797 0.0 36 0.0015406987424342804 0.0 0.0 20.328216238253653 0.0 37 0.0016592140303138404 0.0 0.0 20.82467677918113 0.0 38 0.0016592140303138404 0.0 0.0 21.362617670866452 0.0 39 0.0017777293181934003 0.0 0.0 22.085797957507527 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATCG 20 7.0322177E-4 45.000004 21 TCTAGCG 20 7.0322177E-4 45.000004 1 ACGACCC 20 7.0322177E-4 45.000004 15 TATAGCG 45 3.8380676E-10 45.0 1 TACGGGT 75 0.0 42.0 4 CGGTCTA 50 1.0804797E-9 40.500004 31 CGGGTAC 85 0.0 39.705883 6 CGAAAGG 120 0.0 39.375004 2 TTGAGCG 65 9.094947E-12 38.07692 1 TCGTCCC 190 0.0 37.894737 38 ACAACGA 125 0.0 37.800003 13 ACGGGAG 435 0.0 37.75862 5 TGATCGG 30 1.1396644E-4 37.500004 2 TCGTTAG 30 1.1396644E-4 37.500004 1 TAACGCC 30 1.1396644E-4 37.500004 12 CTAGGCG 30 1.1396644E-4 37.500004 1 CGTTTTT 860 0.0 37.15116 1 CTCGTCC 205 0.0 36.219513 37 CCTCGTC 205 0.0 36.219513 36 TCACGAC 50 4.8763468E-8 36.000004 25 >>END_MODULE