SRR2935938.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935938.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	353988
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1948	0.5503011401516436	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1530	0.4322180412895353	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC	1485	0.41950574595749013	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	1094	0.30905002429460887	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	805	0.22740883871769663	No Hit
TGAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATG	604	0.1706272529012283	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	527	0.14887510311083993	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	521	0.14718013039990058	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	481	0.13588031232697154	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	418	0.11808309886210831	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	409	0.1155406397956993	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	361	0.10198085810818447	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	30	2.1612286E-6	45.000004	2
GACGTAA	30	2.1612286E-6	45.000004	40
TCTACGG	25	3.8853163E-5	45.000004	2
GGTATGA	30	2.1612286E-6	45.000004	8
CGAATAT	60	0.0	45.000004	14
CGGGACG	30	2.1612286E-6	45.000004	6
CATAAGG	25	3.8853163E-5	45.000004	2
GCTACGA	65	0.0	45.000004	10
ATCGCTC	25	3.8853163E-5	45.000004	31
GCACTAG	25	3.8853163E-5	45.000004	1
TCACGCA	20	7.026664E-4	45.0	1
GATACGT	20	7.026664E-4	45.0	9
GTACCGT	20	7.026664E-4	45.0	43
GTACCGG	20	7.026664E-4	45.0	2
CTGTACG	20	7.026664E-4	45.0	1
GTTTCGA	20	7.026664E-4	45.0	34
GGCCGAT	40	6.7921064E-9	45.0	8
TTCGTAC	20	7.026664E-4	45.0	32
CGATTCG	20	7.026664E-4	45.0	10
CGCTAAA	20	7.026664E-4	45.0	26