SRR2935937.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935937.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	894869
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3353	0.3746917146532062	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	2397	0.26786043543803617	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGC	1752	0.19578284642780114	No Hit
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	1670	0.18661949402649997	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCG	1575	0.17600341502499248	No Hit
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	1149	0.1283986818182326	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	986	0.1101837252156461	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	917	0.10247309941455117	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATGCG	20	7.032447E-4	45.000004	1
GTATACG	20	7.032447E-4	45.000004	1
TCGATTG	25	3.8901104E-5	45.0	1
CTACGCG	25	3.8901104E-5	45.0	1
TATCGCG	35	1.2115197E-7	45.0	1
TATAGCG	40	3.4570803E-7	39.375004	1
CCGATGA	300	0.0	39.0	18
CGTTTTT	1565	0.0	38.81789	1
TACGGGA	245	0.0	38.57143	4
TACGGGT	35	6.2467407E-6	38.571426	4
TACGTAG	35	6.2467407E-6	38.571426	1
AAATGCG	35	6.2467407E-6	38.571426	1
GGCGTAG	65	9.094947E-12	38.07692	1
TAACACG	30	1.1397198E-4	37.500004	1
AATAGCG	30	1.1397198E-4	37.500004	1
CTACGGG	150	0.0	37.5	3
CGATGAA	315	0.0	37.142857	19
CGTAAGG	110	0.0	36.81818	2
CACAACG	235	0.0	36.38298	12
GGCGATA	180	0.0	36.250004	8