SRR2935936.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935936.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	445013
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1735	0.38987625080615623	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1186	0.26650906827440995	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	1125	0.2528016035486604	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGC	1106	0.2485320653553941	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCG	1051	0.2361728758485707	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	935	0.21010622161599773	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	537	0.12067063209389389	No Hit
TCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	491	0.11033385541545979	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACAGCG	30	2.1624928E-6	45.000004	1
TATCAAC	20	7.0286234E-4	45.0	26
GCGAAAG	25	3.8869395E-5	45.0	1
TAGCGCG	20	7.0286234E-4	45.0	1
GGATCGA	25	3.8869395E-5	45.0	8
TTCGTAC	35	1.2096825E-7	45.0	33
ATCACCC	40	6.7993824E-9	45.0	36
TCTAGCG	35	1.2096825E-7	45.0	1
CGTACAT	35	1.2096825E-7	45.0	35
TCGTAAG	25	3.8869395E-5	45.0	1
CGCACGG	80	0.0	45.0	2
ATTATCG	25	3.8869395E-5	45.0	30
CCACGTT	20	7.0286234E-4	45.0	43
AATCGAT	20	7.0286234E-4	45.0	40
CACAACG	210	0.0	42.857143	12
TAGGGTC	85	0.0	42.352943	5
ACAACGA	220	0.0	41.93182	13
AAACGGG	70	0.0	41.785713	3
CGTAAGG	60	3.6379788E-12	41.250004	2
AGCGACT	200	0.0	40.5	19