SRR2935935.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935935.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	641339
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	1586	0.24729511225732412	No Hit
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	1083	0.16886545181253595	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	971	0.1514019886518674	No Hit
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	890	0.1387721626160268	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	648	0.1010386082867251	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGTA	20	7.030953E-4	45.0	16
CGACAAT	20	7.030953E-4	45.0	20
ACGGACG	25	3.8888702E-5	45.0	1
ATACGCG	20	7.030953E-4	45.0	1
TGTCGAA	20	7.030953E-4	45.0	35
TCAACGG	20	7.030953E-4	45.0	2
TAACGCG	30	2.1639953E-6	44.999996	1
CGAATAT	155	0.0	43.54839	14
GCTACGA	165	0.0	42.272728	10
TACGAAT	160	0.0	42.1875	12
CGCGACC	65	0.0	41.538464	10
CGACCCG	60	3.6379788E-12	41.249996	32
GTTTACG	55	6.002665E-11	40.909092	1
TTGCACG	50	1.0804797E-9	40.5	1
ACAACGA	95	0.0	40.263157	13
TTTCGCA	45	1.925946E-8	40.0	14
GCCGTCA	45	1.925946E-8	40.0	29
GGCGTAG	40	3.455043E-7	39.375	1
TACGCGG	80	0.0	39.375	2
CGTAAGG	110	0.0	38.86364	2