SRR2935932.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935932.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	729415
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1572	0.21551517311818374	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1186	0.1625960530013778	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1156	0.1584831680182064	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1032	0.14148324342109772	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	947	0.12983006930211197	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	849	0.11639464502375191	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGAAC	90	0.0	45.0	17
TTTCGCG	25	3.8893988E-5	45.0	1
CGCATCG	20	7.031591E-4	45.0	21
TAACGCC	20	7.031591E-4	45.0	12
TCGATCA	20	7.031591E-4	45.0	17
CTCGACA	20	7.031591E-4	45.0	10
TAGTACG	40	6.8084773E-9	45.0	1
ACAACGA	80	0.0	42.1875	13
CCATACG	105	0.0	40.714287	2
CACAACG	90	0.0	40.0	12
TGGGCGA	230	0.0	39.130436	6
AACCCGC	105	0.0	38.57143	21
TGCGAAG	35	6.245149E-6	38.57143	1
GCTAACG	35	6.245149E-6	38.57143	1
TAGTATG	35	6.245149E-6	38.57143	1
CATACGA	170	0.0	38.38235	18
GATTCGC	55	2.746674E-9	36.81818	15
TCGACGG	55	2.746674E-9	36.81818	2
TGCACGG	80	0.0	36.5625	2
TACGGGA	260	0.0	36.346153	4