SRR2935931.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935931.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	422779
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1536	0.3633103820199206	No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	1250	0.2956627457844406	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	892	0.2109849353917768	No Hit
CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	818	0.1934817008413379	No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	706	0.16699031881905205	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	512	0.12110346067330686	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	20	7.02822E-4	45.000004	25
ATTAGCG	20	7.02822E-4	45.000004	1
CAATTCA	20	7.02822E-4	45.000004	32
TCTACTA	20	7.02822E-4	45.000004	22
TCGTAAG	20	7.02822E-4	45.000004	1
CGGCTAT	20	7.02822E-4	45.000004	41
AACTCTA	20	7.02822E-4	45.000004	12
AATACCC	20	7.02822E-4	45.000004	20
TACGTAC	20	7.02822E-4	45.000004	30
TACCGGT	20	7.02822E-4	45.000004	40
TGCCGAA	20	7.02822E-4	45.000004	41
AACACCG	20	7.02822E-4	45.000004	37
CGGGTTA	25	3.8866077E-5	45.0	6
TACGGAA	25	3.8866077E-5	45.0	5
CCATACG	25	3.8866077E-5	45.0	2
ATACGGA	25	3.8866077E-5	45.0	4
CGCGGGT	55	6.002665E-11	40.909092	4
CGTTTGG	55	6.002665E-11	40.909092	2
CGGGTAG	45	1.9233994E-8	40.0	6
TAGCACG	45	1.9233994E-8	40.0	1