##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935931.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 422779 Sequences flagged as poor quality 0 Sequence length 51 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.044999869908395 33.0 31.0 34.0 30.0 34.0 2 32.161207155511505 33.0 31.0 34.0 30.0 34.0 3 32.233497879506785 34.0 31.0 34.0 30.0 34.0 4 35.78702584565458 37.0 35.0 37.0 35.0 37.0 5 35.81509724939034 37.0 35.0 37.0 35.0 37.0 6 35.82723597908127 37.0 35.0 37.0 35.0 37.0 7 36.00885332525977 37.0 35.0 37.0 35.0 37.0 8 35.767968607712305 37.0 35.0 37.0 35.0 37.0 9 37.50017384969452 39.0 37.0 39.0 35.0 39.0 10 37.218892139865034 39.0 37.0 39.0 34.0 39.0 11 37.12340963009043 39.0 37.0 39.0 34.0 39.0 12 36.830329794053156 39.0 35.0 39.0 33.0 39.0 13 36.68748920830978 39.0 35.0 39.0 33.0 39.0 14 37.36147490769409 40.0 36.0 41.0 31.0 41.0 15 37.67170554828882 40.0 36.0 41.0 32.0 41.0 16 37.939330004565036 40.0 36.0 41.0 33.0 41.0 17 37.999687780140455 40.0 36.0 41.0 33.0 41.0 18 38.00519893372187 40.0 36.0 41.0 33.0 41.0 19 38.02131846662204 40.0 36.0 41.0 34.0 41.0 20 37.8804670998323 40.0 36.0 41.0 33.0 41.0 21 37.84730793156708 40.0 36.0 41.0 33.0 41.0 22 37.902019731349 40.0 35.0 41.0 34.0 41.0 23 37.94744772091329 40.0 35.0 41.0 34.0 41.0 24 37.84656286144771 40.0 35.0 41.0 34.0 41.0 25 37.737718760865604 40.0 35.0 41.0 33.0 41.0 26 37.578221718675714 39.0 35.0 41.0 33.0 41.0 27 37.539660200719524 39.0 35.0 41.0 33.0 41.0 28 37.52068811364803 39.0 35.0 41.0 33.0 41.0 29 37.49310159681536 39.0 35.0 41.0 33.0 41.0 30 37.37855475319257 39.0 35.0 41.0 33.0 41.0 31 37.332086030763115 39.0 35.0 41.0 32.0 41.0 32 37.303560489049836 39.0 35.0 41.0 33.0 41.0 33 37.288770255854715 39.0 35.0 41.0 33.0 41.0 34 37.14220195421248 39.0 35.0 41.0 32.0 41.0 35 37.137230089479374 39.0 35.0 41.0 32.0 41.0 36 37.04761825918506 39.0 35.0 41.0 32.0 41.0 37 36.9610884173528 39.0 35.0 41.0 32.0 41.0 38 36.872692352269155 39.0 35.0 41.0 31.0 41.0 39 36.80184209717134 39.0 35.0 41.0 31.0 41.0 40 36.66354052590124 39.0 35.0 41.0 31.0 41.0 41 36.48510214556541 39.0 35.0 41.0 31.0 41.0 42 36.537093848086116 39.0 35.0 41.0 31.0 41.0 43 36.5168539591607 38.0 35.0 41.0 31.0 41.0 44 36.425848966008246 38.0 35.0 41.0 31.0 41.0 45 36.31616045262418 38.0 35.0 40.0 31.0 41.0 46 36.27980339610056 38.0 35.0 40.0 31.0 41.0 47 36.19114005189473 38.0 35.0 40.0 31.0 41.0 48 36.10752426208492 38.0 35.0 40.0 31.0 41.0 49 36.02584801988746 37.0 35.0 40.0 31.0 41.0 50 35.85335600869485 37.0 35.0 40.0 30.0 41.0 51 34.755030405956774 36.0 34.0 39.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 9.0 10 8.0 11 15.0 12 10.0 13 12.0 14 14.0 15 20.0 16 36.0 17 63.0 18 106.0 19 181.0 20 289.0 21 508.0 22 757.0 23 1024.0 24 1429.0 25 2067.0 26 2713.0 27 3425.0 28 4276.0 29 5215.0 30 6814.0 31 8658.0 32 11910.0 33 18586.0 34 34918.0 35 33243.0 36 31865.0 37 49216.0 38 82724.0 39 122571.0 40 91.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.42221349688608 22.035389648019414 24.518483652215462 10.023913202879045 2 32.29961753067205 23.86613336991667 25.847783357262305 17.986465742148972 3 33.98986231577255 22.577043798296508 26.144155693636627 17.28893819229432 4 30.313709999787125 24.5497056381703 24.79664316344946 20.339941198593117 5 25.85984639729031 29.26256980597428 24.69635436007938 20.181229436656032 6 27.22155073927513 33.056750690076846 24.00828801808983 15.713410552558194 7 80.39519465252532 6.25362186863586 8.171172172695428 5.180011306143398 8 81.44846361810781 4.857857178336673 8.166678098959505 5.527001104596018 9 75.36987409497632 7.004132182535083 10.735396034334723 6.890597688153859 10 47.77176728267014 20.265907247048695 16.988781372773957 14.973544097507208 11 34.59159513599304 22.67473076950369 21.953077139593027 20.780596954910248 12 31.632838906378986 19.941387817275693 28.070221084774786 20.355552191570535 13 29.17836505597487 20.52112332920982 30.953287651468024 19.347223963347282 14 22.226506046894475 23.682585937333688 33.39073132771495 20.70017668805688 15 20.628034978085477 23.298460898010546 35.330042409864255 20.743461714039725 16 27.496398827756348 23.190366598151755 28.392848272974767 20.920386301117134 17 28.127461392358654 22.752549204194153 25.728808668358642 23.391180735088547 18 27.770300795451053 23.287343978769048 28.716185051764633 20.226170174015266 19 27.89613486005691 24.223057436627645 26.0485974941991 21.832210209116347 20 25.33995302510295 28.384096655699548 26.25508835585495 20.02086196334255 21 25.162791907828915 24.745079580584655 30.992315133911568 19.09981337767486 22 23.998353749831473 21.390844862209335 31.04364218657975 23.567159201379447 23 23.444400029329746 22.90274587905265 30.727874374081964 22.92497971753564 24 24.517301001232322 25.444735902208954 26.844994666244066 23.192968430314657 25 26.281579737877237 24.086342982976923 26.076744587597776 23.555332691548067 26 22.90369199983916 24.918929275105906 25.988755354452326 26.18862337060261 27 23.99740762904496 23.934490596742034 29.33707681791196 22.731024956301045 28 21.332894964035585 24.417485258255496 27.4968718881496 26.75274788955932 29 24.404003037047726 25.957060308104236 26.32439170346682 23.31454495138122 30 28.271744812301463 23.604057912053342 25.780608781420078 22.343588494225113 31 26.519765645881183 23.763006204187057 26.29009482495583 23.427133324975934 32 29.50099224417485 23.879142530731183 23.427842915565815 23.192022309528145 33 28.730613393758915 23.068317016691935 25.13795623718302 23.06311335236613 34 23.589629570059063 24.152807968229265 28.661310046147044 23.596252415564635 35 24.795460512466324 26.984547482254325 25.13322563325047 23.086766372028887 36 29.688087629707248 24.384607560924266 24.051099983679418 21.876204825689072 37 24.382005728761364 27.166912263854165 25.117378110076423 23.33370389730805 38 24.370179218929984 26.29175053633222 24.68665662201765 24.651413622720145 39 24.163215296880878 24.148313894493338 26.287492992792927 25.40097781583286 40 26.714193467509027 22.634520636077006 27.065204279304318 23.58608161710965 41 22.166663907147708 22.887371416271858 26.54980498085288 28.396159695727558 42 22.322537306725263 22.283509824281715 30.308742865657944 25.085210003335074 43 23.354518554611275 21.993760333412965 29.42956012479333 25.22216098718243 44 24.44303051949127 22.552208127650616 27.349750105847264 25.65501124701085 45 24.050390393089533 22.464455424701796 25.486128686618777 27.999025495589898 46 24.651413622720145 23.341272863600132 26.487834069336465 25.51947944434326 47 21.478597565158157 23.897355355871507 30.04926923995752 24.574777839012818 48 22.233128892400046 25.826968699959078 27.14869943871384 24.791202968927028 49 25.206076933811755 22.89588650335045 28.461442029996757 23.436594532841035 50 22.729842305317906 23.768209868512862 27.25703026876926 26.244917557399965 51 22.20498179900137 23.96500299210699 25.595405637460704 28.234609571430937 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 152.0 1 338.5 2 525.0 3 757.0 4 989.0 5 708.0 6 427.0 7 442.5 8 458.0 9 462.5 10 467.0 11 484.0 12 501.0 13 480.5 14 460.0 15 477.0 16 494.0 17 511.0 18 528.0 19 558.0 20 588.0 21 727.5 22 867.0 23 971.5 24 1076.0 25 1213.0 26 1689.0 27 2028.0 28 2479.5 29 2931.0 30 3605.0 31 4279.0 32 4995.0 33 5711.0 34 6527.0 35 7343.0 36 8200.0 37 9057.0 38 10225.5 39 11394.0 40 12759.5 41 14125.0 42 15514.5 43 16904.0 44 19200.5 45 21497.0 46 23786.0 47 26075.0 48 30421.0 49 34767.0 50 39262.0 51 43757.0 52 43885.0 53 44013.0 54 40045.0 55 36077.0 56 34021.0 57 31965.0 58 30081.0 59 28197.0 60 24586.0 61 20975.0 62 18683.0 63 16391.0 64 14598.5 65 12806.0 66 10775.0 67 8744.0 68 7483.5 69 6223.0 70 5035.0 71 3847.0 72 3089.5 73 2332.0 74 1750.5 75 895.0 76 621.0 77 500.0 78 379.0 79 259.5 80 140.0 81 109.5 82 79.0 83 55.0 84 31.0 85 27.0 86 23.0 87 17.0 88 11.0 89 8.5 90 6.0 91 3.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 422779.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.91174195353737 #Duplication Level Percentage of deduplicated Percentage of total 1 71.2591228272657 23.45261862326393 2 10.85256670425802 7.143537498081829 3 4.061410240313544 4.010042573899606 4 2.1833613375473613 2.8743289973075585 5 1.3738381898878942 2.260770399575262 6 0.9684825977280576 1.912466960575042 7 0.7565392409083794 1.7429316992151138 8 0.6277031058517876 1.6527042114582386 9 0.5738957949117497 1.699911927932014 >10 7.2197526690093365 48.09586376252326 >50 0.08197637665856351 1.8009649143189577 >100 0.036998187695457874 1.9895851293941238 >500 0.0029018186427810094 0.6990885946077036 >1k 0.0014509093213905047 0.6651847078473574 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1536 0.3633103820199206 No Hit GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC 1250 0.2956627457844406 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 892 0.2109849353917768 No Hit CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC 818 0.1934817008413379 No Hit CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT 706 0.16699031881905205 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 512 0.12110346067330686 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17645152668415412 0.0 2 0.0 0.0 0.0 0.8697215329995104 0.0 3 0.0 0.0 0.0 1.233504975412686 0.0 4 0.0 0.0 0.0 1.7051461874880256 0.0 5 0.0 0.0 0.0 3.0992551664108197 0.0 6 0.0 0.0 0.0 3.856624856012243 0.0 7 0.0 0.0 0.0 4.661064054742549 0.0 8 0.0 0.0 0.0 5.8851078222901325 0.0 9 0.0 0.0 0.0 6.347760886893625 0.0 10 0.0 0.0 0.0 7.346627907251779 0.0 11 0.0 0.0 0.0 8.865388299797294 0.0 12 0.0 0.0 0.0 10.02060178012626 0.0 13 0.0 0.0 0.0 10.495790945151013 0.0 14 0.0 0.0 0.0 10.697787733070943 0.0 15 0.0 0.0 0.0 11.060388524500981 0.0 16 0.0 0.0 0.0 11.753895061012964 0.0 17 0.0 0.0 0.0 12.541540615782713 0.0 18 0.0 0.0 0.0 13.473233060298643 0.0 19 0.0 0.0 0.0 14.048711028693479 0.0 20 0.0 0.0 0.0 14.667237492874527 0.0 21 0.0 0.0 0.0 15.397406209863782 0.0 22 0.0 0.0 0.0 16.125682685280015 0.0 23 0.0 0.0 0.0 16.812329846089803 0.0 24 0.0 0.0 0.0 17.365337445805018 0.0 25 2.3653019662755244E-4 0.0 0.0 17.878844502683435 2.3653019662755244E-4 26 2.3653019662755244E-4 0.0 0.0 18.36562364734294 2.3653019662755244E-4 27 2.3653019662755244E-4 0.0 0.0 19.00803966138337 2.3653019662755244E-4 28 2.3653019662755244E-4 0.0 0.0 19.530534865733635 2.3653019662755244E-4 29 2.3653019662755244E-4 0.0 0.0 20.119021994942983 2.3653019662755244E-4 30 2.3653019662755244E-4 0.0 0.0 20.879466577100565 2.3653019662755244E-4 31 2.3653019662755244E-4 0.0 0.0 21.443827626253906 2.3653019662755244E-4 32 2.3653019662755244E-4 0.0 0.0 21.91807067049215 2.3653019662755244E-4 33 2.3653019662755244E-4 0.0 0.0 22.415020613606636 2.3653019662755244E-4 34 2.3653019662755244E-4 0.0 0.0 23.01888220559678 2.3653019662755244E-4 35 4.730603932551049E-4 0.0 0.0 23.62936664309249 2.3653019662755244E-4 36 4.730603932551049E-4 0.0 0.0 24.137906565841728 2.3653019662755244E-4 37 4.730603932551049E-4 0.0 0.0 24.732780010360024 2.3653019662755244E-4 38 4.730603932551049E-4 0.0 0.0 25.419663701366435 2.3653019662755244E-4 39 4.730603932551049E-4 0.0 0.0 26.809515136749933 2.3653019662755244E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 20 7.02822E-4 45.000004 25 ATTAGCG 20 7.02822E-4 45.000004 1 CAATTCA 20 7.02822E-4 45.000004 32 TCTACTA 20 7.02822E-4 45.000004 22 TCGTAAG 20 7.02822E-4 45.000004 1 CGGCTAT 20 7.02822E-4 45.000004 41 AACTCTA 20 7.02822E-4 45.000004 12 AATACCC 20 7.02822E-4 45.000004 20 TACGTAC 20 7.02822E-4 45.000004 30 TACCGGT 20 7.02822E-4 45.000004 40 TGCCGAA 20 7.02822E-4 45.000004 41 AACACCG 20 7.02822E-4 45.000004 37 CGGGTTA 25 3.8866077E-5 45.0 6 TACGGAA 25 3.8866077E-5 45.0 5 CCATACG 25 3.8866077E-5 45.0 2 ATACGGA 25 3.8866077E-5 45.0 4 CGCGGGT 55 6.002665E-11 40.909092 4 CGTTTGG 55 6.002665E-11 40.909092 2 CGGGTAG 45 1.9233994E-8 40.0 6 TAGCACG 45 1.9233994E-8 40.0 1 >>END_MODULE