SRR2935930.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935930.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	537337
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	1202	0.2236957440116724	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	974	0.18126427176985765	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	731	0.13604125530160774	No Hit
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	730	0.13585515235317874	TruSeq Adapter, Index 27 (95% over 23bp)
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	639	0.11891978404613864	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	578	0.10756750419196892	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	578	0.10756750419196892	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	20	7.0299284E-4	45.000004	1
CGCATGG	50	2.1827873E-11	45.000004	2
AATTGCG	20	7.0299284E-4	45.000004	1
CGCTAGT	45	3.8380676E-10	45.000004	4
ACTACGG	25	3.8880222E-5	45.000004	2
CGTAAGG	45	3.8380676E-10	45.000004	2
ACGTATT	45	3.8380676E-10	45.000004	26
GCGCTAG	25	3.8880222E-5	45.000004	1
TCGACGT	25	3.8880222E-5	45.000004	26
ATGCACG	20	7.0299284E-4	45.000004	1
ACGCTAG	30	2.163335E-6	44.999996	1
TCCGCTA	55	6.002665E-11	40.909092	2
TAACGGG	160	0.0	40.781254	3
TTAACGG	45	1.9250365E-8	40.000004	2
GCGTTAG	40	3.4536424E-7	39.375004	1
TAGGGCG	80	0.0	39.375004	5
ACGGTCT	40	3.4536424E-7	39.375004	30
TAAGGGA	275	0.0	39.272728	4
CGAATAT	155	0.0	39.193546	14
GCTACGA	155	0.0	39.193546	10