##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935929.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 680621 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.97905883009781 33.0 31.0 34.0 30.0 34.0 2 32.10062428282407 33.0 31.0 34.0 30.0 34.0 3 32.17771123723776 34.0 31.0 34.0 30.0 34.0 4 35.7653025692713 37.0 35.0 37.0 35.0 37.0 5 35.77529197600427 37.0 35.0 37.0 35.0 37.0 6 35.78330524623836 37.0 35.0 37.0 35.0 37.0 7 35.949619538627225 37.0 35.0 37.0 35.0 37.0 8 35.55204879073669 37.0 35.0 37.0 33.0 37.0 9 37.36285245386199 39.0 37.0 39.0 34.0 39.0 10 37.12099244660391 39.0 37.0 39.0 33.0 39.0 11 37.05162344388434 39.0 37.0 39.0 33.0 39.0 12 36.85319289296099 39.0 35.0 39.0 33.0 39.0 13 36.73582066965316 39.0 35.0 39.0 33.0 39.0 14 37.63018772562116 40.0 36.0 41.0 32.0 41.0 15 37.80496634690966 40.0 36.0 41.0 33.0 41.0 16 38.0357893747034 40.0 37.0 41.0 33.0 41.0 17 37.996021280565834 40.0 36.0 41.0 33.0 41.0 18 38.01898707210033 40.0 36.0 41.0 33.0 41.0 19 38.03736293767016 40.0 36.0 41.0 34.0 41.0 20 37.799583027852506 40.0 36.0 41.0 33.0 41.0 21 37.8425658332611 40.0 36.0 41.0 33.0 41.0 22 37.856027069396916 40.0 36.0 41.0 33.0 41.0 23 37.82973490385986 40.0 36.0 41.0 33.0 41.0 24 37.76145167427981 40.0 36.0 41.0 33.0 41.0 25 37.73721057681147 40.0 35.0 41.0 33.0 41.0 26 37.55399701155269 40.0 35.0 41.0 33.0 41.0 27 37.4739245483169 39.0 35.0 41.0 33.0 41.0 28 37.45536796543157 39.0 35.0 41.0 33.0 41.0 29 37.427462567273125 39.0 35.0 41.0 33.0 41.0 30 37.32816942174867 39.0 35.0 41.0 32.0 41.0 31 37.301105901816136 39.0 35.0 41.0 32.0 41.0 32 37.198825778223124 39.0 35.0 41.0 32.0 41.0 33 37.1462370394096 39.0 35.0 41.0 32.0 41.0 34 37.05621924683488 39.0 35.0 41.0 31.0 41.0 35 37.01962031732785 40.0 35.0 41.0 31.0 41.0 36 36.943525104279765 39.0 35.0 41.0 31.0 41.0 37 36.877309104479586 39.0 35.0 41.0 31.0 41.0 38 36.824918713939184 39.0 35.0 41.0 31.0 41.0 39 36.72783384585548 39.0 35.0 41.0 31.0 41.0 40 36.63608381169549 39.0 35.0 41.0 31.0 41.0 41 36.55881173222689 39.0 35.0 41.0 30.0 41.0 42 36.51332680008404 39.0 35.0 41.0 31.0 41.0 43 36.459592049025815 39.0 35.0 41.0 31.0 41.0 44 36.414547890823236 39.0 35.0 41.0 31.0 41.0 45 36.29202302015366 39.0 35.0 41.0 30.0 41.0 46 36.189548956026925 38.0 35.0 41.0 30.0 41.0 47 36.11245024764149 38.0 35.0 40.0 30.0 41.0 48 36.08810630292042 38.0 35.0 40.0 30.0 41.0 49 36.09186169689151 38.0 35.0 40.0 30.0 41.0 50 35.94673100007199 38.0 35.0 40.0 30.0 41.0 51 34.93084550726469 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 8.0 10 23.0 11 15.0 12 14.0 13 16.0 14 18.0 15 34.0 16 56.0 17 104.0 18 172.0 19 316.0 20 712.0 21 1216.0 22 1990.0 23 2836.0 24 3772.0 25 4677.0 26 5441.0 27 6247.0 28 7123.0 29 8541.0 30 10689.0 31 13736.0 32 18373.0 33 27429.0 34 49937.0 35 51844.0 36 48842.0 37 73057.0 38 127583.0 39 215623.0 40 169.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.42363371097865 20.493637428172214 22.773320247244797 10.309408613604342 2 30.611162453112673 27.733643246388223 23.34897101323644 18.306223287262664 3 30.738693046497247 27.326661974872945 24.96675829867136 16.96788667995845 4 27.65356931390598 23.959589845156117 29.260190326187406 19.1266505147505 5 28.5492219605331 27.289783888537084 23.87540202256469 20.285592128365128 6 25.098255857518353 34.93618327968135 24.31338439454557 15.652176468254725 7 75.84984888800082 5.879042815311311 12.510192897368727 5.760915399319151 8 75.18942260083071 8.693090574636987 9.695998213396296 6.421488611136008 9 69.98505776342488 7.276296205964846 11.301590753150432 11.43705527745985 10 43.44738114163389 23.826329190548044 18.17913346781836 14.547156199999705 11 33.69129074771422 22.46345616723551 24.144567975422447 19.700685109627823 12 29.363184503563655 20.212864428220698 28.72479691340702 21.69915415480862 13 28.00324997318625 21.8462257262118 31.266446377646297 18.88407792295565 14 21.638327351051466 25.939105610905333 30.27088497122481 22.15168206681839 15 19.242427136394557 23.35514184840021 35.4352863047129 21.967144710492327 16 24.254467611196244 24.853332471375406 27.90716125420755 22.985038663220795 17 24.014539663043017 26.291871687767493 27.469472731520185 22.224115917669305 18 25.214032479162412 23.563627922147568 28.911244290140914 22.311095308549103 19 23.546143889183554 26.465536620233582 26.338446800789278 23.649872689793586 20 24.961322086741372 27.81063176128859 27.93125689627561 19.29678925569443 21 23.101109134158364 28.534823345150972 29.384488577343337 18.979578943347324 22 22.79726896466609 22.40850634934861 31.401470128015447 23.392754557969855 23 22.239543005578728 26.241182684636534 29.78280129469999 21.736473015084755 24 23.07378114986167 25.08958730335973 28.303857800449883 23.53277374632872 25 22.226319787370652 28.553482775289034 25.51684417612739 23.70335326121292 26 20.77543890065102 24.370685006780572 27.856619175723345 26.997256916845057 27 23.036168440292027 24.851275526320816 28.38025861676322 23.732297416623936 28 18.080987803785074 26.841369866636498 28.16633633108588 26.91130599849255 29 21.126294957105348 24.408297716350216 27.341795213488858 27.12361211305558 30 23.117858543888595 25.42971786060083 28.49897373134241 22.953449864168164 31 22.88101601331725 25.609406703583932 25.13998245719718 26.369594825901636 32 24.251529118261118 24.525543584461836 25.02993589677662 26.192991400500425 33 23.120356262883455 23.132551008564235 25.209624739759718 28.537467988792585 34 19.843495866275063 23.439623520285153 27.919355999888335 28.797524613551445 35 19.842467393747768 24.127083942458434 29.076093743801618 26.954354919992184 36 20.861977517590553 26.50623474738511 24.672909005158523 27.958878729865816 37 18.8886325870051 26.364452463265163 28.086850097190652 26.66006485253908 38 20.314977057716412 26.09249494211904 25.32731138181161 28.265216618352945 39 21.256176344838025 22.641381914457533 24.729915768100014 31.372525972604432 40 22.36986516725167 20.654813765664002 28.90815887255903 28.06716219452529 41 18.813994866452845 22.696331732344433 26.512552507195636 31.97712089400709 42 19.66968400916222 21.819044666561858 31.17167998048841 27.33959134378751 43 21.210629704343535 22.4105632944032 27.899521172576218 28.47928582867705 44 21.39825247825148 21.997998886311176 27.2866984709552 29.317050164482144 45 20.21697831832988 21.251621680788574 27.04353818057333 31.487861820308215 46 22.75010615305728 23.029850680481502 26.783187706520955 27.43685545994026 47 17.502986243445324 23.472387716511832 32.28610342613584 26.738522613907005 48 19.361729949560768 23.86790886558011 28.54834041265256 28.22202077220656 49 21.464809343232137 21.212245875457857 30.699317241166526 26.623627540143485 50 20.11001717549121 21.754103972695525 29.596941616553117 28.538937235260153 51 19.31735870624033 21.599833093601283 26.860176221421316 32.22263197873706 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 192.0 1 455.5 2 719.0 3 1560.0 4 2401.0 5 1640.5 6 880.0 7 887.0 8 894.0 9 907.5 10 921.0 11 945.0 12 969.0 13 950.0 14 931.0 15 1008.5 16 1086.0 17 1082.0 18 1078.0 19 1114.0 20 1150.0 21 1314.0 22 1478.0 23 1523.0 24 1568.0 25 2160.0 26 3471.0 27 4190.0 28 4816.0 29 5442.0 30 6485.0 31 7528.0 32 9184.5 33 10841.0 34 12914.0 35 14987.0 36 16821.0 37 18655.0 38 19386.5 39 20118.0 40 21916.5 41 23715.0 42 26256.0 43 28797.0 44 31456.0 45 34115.0 46 38053.5 47 41992.0 48 59087.0 49 76182.0 50 74306.5 51 72431.0 52 72370.5 53 72310.0 54 63520.0 55 54730.0 56 49803.0 57 44876.0 58 40552.0 59 36228.0 60 32068.0 61 27908.0 62 24328.0 63 20748.0 64 18073.5 65 15399.0 66 13285.0 67 11171.0 68 9741.5 69 8312.0 70 6776.0 71 5240.0 72 4364.0 73 3488.0 74 2834.5 75 1563.0 76 945.0 77 810.5 78 676.0 79 442.5 80 209.0 81 163.0 82 117.0 83 71.0 84 25.0 85 15.5 86 6.0 87 20.5 88 35.0 89 18.5 90 2.0 91 2.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 680621.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.531640445777896 #Duplication Level Percentage of deduplicated Percentage of total 1 71.28935536010475 23.191596761862165 2 11.550504014711128 7.515136871481929 3 4.236438613092097 4.134548931951661 4 2.160840615712522 2.8118275988397237 5 1.3721793685392496 2.2319622922216715 6 0.969769265352906 1.8928911033496147 7 0.7348543553203233 1.6734212367106267 8 0.5900432399353773 1.535605962323164 9 0.5169353701544035 1.5135080036011341 >10 6.418221388870274 43.67882845350586 >50 0.1084541109218895 2.3125952186363685 >100 0.044201885536112276 2.591885563912632 >500 0.0027341372496564294 0.5940108358841178 >1k 0.0041012058744846445 1.854226986583116 >5k 0.0013670686248282147 2.4679541791362105 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTC 6088 0.894477249453073 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGC 5463 0.8026493452303117 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCG 5097 0.7488749245174627 No Hit GCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 2849 0.418588318609035 TruSeq Adapter, Index 16 (100% over 23bp) CCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 1476 0.21686077861247302 TruSeq Adapter, Index 16 (100% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1303 0.19144281472361271 No Hit CTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGCT 1216 0.17866037045580432 TruSeq Adapter, Index 16 (96% over 25bp) GAACTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCT 1146 0.16837564518285508 TruSeq Adapter, Index 16 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTACCCTCT 1143 0.1679348712425858 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1141 0.167641021949073 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1128 0.16573100154123954 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCT 1106 0.16249865931259835 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTC 813 0.11944973781296787 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTACCCTCTCGTA 782 0.1148950737635189 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 735 0.10798961536596725 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.876985870256721E-4 0.0 0.0 0.1889450957287536 0.0 2 7.346232337820902E-4 0.0 0.0 1.0372880061003114 0.0 3 8.815478805385082E-4 0.0 0.0 1.4648387281614879 0.0 4 8.815478805385082E-4 0.0 0.0 2.1922626542525134 0.0 5 8.815478805385082E-4 0.0 0.0 4.6184293461412445 0.0 6 8.815478805385082E-4 0.0 0.0 5.612374581448413 0.0 7 8.815478805385082E-4 0.0 0.0 6.697266173097804 0.0 8 8.815478805385082E-4 0.0 0.0 8.227633293712653 0.0 9 8.815478805385082E-4 0.0 0.0 8.801961737883492 0.0 10 8.815478805385082E-4 0.0 0.0 10.742395547595505 0.0 11 8.815478805385082E-4 0.0 0.0 12.375609920939848 0.0 12 8.815478805385082E-4 0.0 0.0 14.538193796547565 0.0 13 8.815478805385082E-4 0.0 0.0 15.156893484038841 0.0 14 8.815478805385082E-4 0.0 0.0 15.451183551491946 0.0 15 8.815478805385082E-4 0.0 0.0 16.002444826122026 0.0 16 8.815478805385082E-4 0.0 0.0 16.78981400808967 0.0 17 8.815478805385082E-4 0.0 0.0 17.663868731643603 0.0 18 8.815478805385082E-4 0.0 0.0 18.538217304491045 0.0 19 8.815478805385082E-4 0.0 0.0 19.34116049901487 1.4692464675641803E-4 20 8.815478805385082E-4 0.0 0.0 20.008639169229276 1.4692464675641803E-4 21 8.815478805385082E-4 0.0 0.0 20.76412570285078 1.4692464675641803E-4 22 8.815478805385082E-4 0.0 0.0 21.59998001824804 1.4692464675641803E-4 23 8.815478805385082E-4 0.0 0.0 22.292582803057797 1.4692464675641803E-4 24 0.0010284725272949261 0.0 0.0 22.893945382231816 1.4692464675641803E-4 25 0.0010284725272949261 0.0 0.0 23.43932967099164 1.4692464675641803E-4 26 0.0010284725272949261 0.0 0.0 23.936081901675088 1.4692464675641803E-4 27 0.0011753971740513442 0.0 0.0 24.58974965509439 1.4692464675641803E-4 28 0.0013223218208077623 0.0 0.0 25.118825308064253 1.4692464675641803E-4 29 0.0013223218208077623 0.0 0.0 25.68668906777781 1.4692464675641803E-4 30 0.0013223218208077623 0.0 0.0 26.41719841145072 1.4692464675641803E-4 31 0.0014692464675641803 0.0 0.0 26.991233006328045 1.4692464675641803E-4 32 0.0014692464675641803 0.0 0.0 27.51399089948738 1.4692464675641803E-4 33 0.0014692464675641803 0.0 0.0 28.05173510661587 1.4692464675641803E-4 34 0.0014692464675641803 0.0 0.0 28.630765139482914 1.4692464675641803E-4 35 0.0014692464675641803 0.0 0.0 29.25519488819769 1.4692464675641803E-4 36 0.0014692464675641803 0.0 0.0 29.77648353488946 1.4692464675641803E-4 37 0.0016161711143205984 0.0 0.0 30.342878048135454 1.4692464675641803E-4 38 0.0016161711143205984 0.0 0.0 30.986261076281806 1.4692464675641803E-4 39 0.0016161711143205984 0.0 0.0 32.03148301330697 1.4692464675641803E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCACGA 40 6.8084773E-9 45.000004 24 GTTCGCA 20 7.0312555E-4 45.000004 23 CATCGTT 20 7.0312555E-4 45.000004 36 TATAGCG 20 7.0312555E-4 45.000004 1 CGGTCTA 40 6.8084773E-9 45.000004 31 TAGGACG 20 7.0312555E-4 45.000004 1 TATCGAG 20 7.0312555E-4 45.000004 1 CGAATAT 190 0.0 45.0 14 TCGACCA 35 1.2109558E-7 45.0 14 TAATGCG 35 1.2109558E-7 45.0 1 GCGTTAG 65 0.0 44.999996 1 TCGACGT 30 2.1641918E-6 44.999996 26 GCTACGA 190 0.0 43.81579 10 TACGAAT 195 0.0 42.692303 12 CGTTAGG 85 0.0 42.35294 2 CTACGAA 200 0.0 41.625 11 CGATGAA 740 0.0 41.351353 19 AACCCGC 50 1.0804797E-9 40.5 21 CGTAAGG 50 1.0804797E-9 40.5 2 TACGGCT 720 0.0 39.6875 7 >>END_MODULE