##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935926.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 376794 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08597536054184 33.0 31.0 34.0 30.0 34.0 2 32.19659814115936 33.0 31.0 34.0 30.0 34.0 3 32.27084030000478 34.0 31.0 34.0 30.0 34.0 4 35.83299097119381 37.0 35.0 37.0 35.0 37.0 5 35.867856176053756 37.0 35.0 37.0 35.0 37.0 6 35.88250343689125 37.0 35.0 37.0 35.0 37.0 7 36.04198315259797 37.0 35.0 37.0 35.0 37.0 8 35.71188766275471 37.0 35.0 37.0 35.0 37.0 9 37.45815219987579 39.0 37.0 39.0 34.0 39.0 10 37.220582068716595 39.0 37.0 39.0 34.0 39.0 11 37.15336496865661 39.0 37.0 39.0 34.0 39.0 12 37.01820888867657 39.0 37.0 39.0 34.0 39.0 13 36.95161812555401 39.0 37.0 39.0 33.0 39.0 14 37.92143186993423 40.0 37.0 41.0 33.0 41.0 15 38.13171653476435 40.0 37.0 41.0 33.0 41.0 16 38.29678551144657 40.0 37.0 41.0 34.0 41.0 17 38.31307292578969 40.0 37.0 41.0 34.0 41.0 18 38.31578793717522 40.0 37.0 41.0 34.0 41.0 19 38.32630296660775 40.0 37.0 41.0 34.0 41.0 20 38.20501653423356 40.0 37.0 41.0 34.0 41.0 21 38.17029729772767 40.0 37.0 41.0 34.0 41.0 22 38.206924738716644 40.0 37.0 41.0 34.0 41.0 23 38.238294664989354 40.0 37.0 41.0 34.0 41.0 24 38.15400722941448 40.0 37.0 41.0 34.0 41.0 25 38.07635737299426 40.0 36.0 41.0 34.0 41.0 26 37.95270890725436 40.0 36.0 41.0 34.0 41.0 27 37.889740813282586 40.0 36.0 41.0 34.0 41.0 28 37.9002478808049 40.0 36.0 41.0 34.0 41.0 29 37.92118239674729 40.0 36.0 41.0 34.0 41.0 30 37.8329007362113 40.0 36.0 41.0 34.0 41.0 31 37.8124227031216 40.0 36.0 41.0 33.0 41.0 32 37.78873071227249 40.0 36.0 41.0 33.0 41.0 33 37.75846749152056 40.0 36.0 41.0 33.0 41.0 34 37.668901309468836 40.0 36.0 41.0 33.0 41.0 35 37.69553655312983 40.0 36.0 41.0 33.0 41.0 36 37.61483197715462 40.0 35.0 41.0 33.0 41.0 37 37.557113435988896 40.0 35.0 41.0 33.0 41.0 38 37.49023073615822 40.0 35.0 41.0 33.0 41.0 39 37.45231877365351 40.0 35.0 41.0 33.0 41.0 40 37.3601437390192 40.0 35.0 41.0 33.0 41.0 41 37.27071025547116 39.0 35.0 41.0 33.0 41.0 42 37.27233448515634 39.0 35.0 41.0 33.0 41.0 43 37.236986257742956 39.0 35.0 41.0 33.0 41.0 44 37.16439752225354 39.0 35.0 41.0 33.0 41.0 45 37.082251840528244 39.0 35.0 41.0 32.0 41.0 46 37.01959691502518 39.0 35.0 41.0 32.0 41.0 47 36.970779789487096 39.0 35.0 41.0 32.0 41.0 48 36.94101286113898 39.0 35.0 41.0 32.0 41.0 49 36.932690010987436 39.0 35.0 41.0 32.0 41.0 50 36.82141435373175 39.0 35.0 41.0 32.0 41.0 51 35.84456228071572 38.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 11.0 10 6.0 11 3.0 12 5.0 13 7.0 14 15.0 15 19.0 16 25.0 17 42.0 18 66.0 19 109.0 20 198.0 21 316.0 22 493.0 23 734.0 24 1001.0 25 1437.0 26 1873.0 27 2475.0 28 2955.0 29 3688.0 30 4831.0 31 6376.0 32 8467.0 33 13025.0 34 25385.0 35 30838.0 36 25565.0 37 38818.0 38 71687.0 39 136214.0 40 105.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.13182269356731 21.076503341348324 23.138638088716913 10.65303587636746 2 32.5737670982022 24.224377245922174 24.414401503208648 18.787454152666974 3 33.215231665047746 24.044438074916265 25.00942159376211 17.73090866627388 4 29.5094932509541 24.637069592403275 24.56833176749099 21.28510538915163 5 25.229701109890286 29.067607233660837 24.708195990382013 20.99449566606687 6 26.501748966278655 32.746009755993995 24.788611283619165 15.963629994108185 7 77.61217004517057 6.271065887461052 9.710611103149201 6.406152964219175 8 76.50599531839678 6.1954277403568 10.068100872094567 7.230476069151845 9 70.25961135262239 8.187232280768802 12.843091981294819 8.710064385313991 10 41.29550895184106 23.77797947950339 19.79330881064985 15.133202758005702 11 30.309134434200118 23.747724220661688 25.24270556325207 20.700435781886124 12 28.35342388679225 21.60145862195258 30.11380223676598 19.931315254489192 13 25.63336995812035 23.839551585216327 30.876818632993093 19.650259823670226 14 19.72828654384093 27.403037203352493 30.898050393583766 21.97062585922281 15 18.482778388190894 25.31675132831202 36.00959675578698 20.190873527710103 16 22.297329575311707 26.190438276617993 30.13609558538618 21.37613656268412 17 22.819896282849513 25.1482242286236 27.239021852789584 24.7928576357373 18 24.3992738737878 24.456865024389984 29.841239510183282 21.302621591638932 19 22.8870417257175 26.500952775256508 28.345461976570753 22.26654352245524 20 24.288868718716326 27.703466615710443 27.845984808675293 20.161679856897933 21 22.747708296841246 27.073148723175 30.349209382315006 19.829933597668752 22 21.48494933571129 23.868214462013725 29.8903379565492 24.75649824572578 23 20.796509498558894 25.9911251240731 29.933863065760068 23.278502311607934 24 22.782740701815847 24.52772602536134 29.11564409199722 23.573889180825596 25 21.006969325413888 27.32102952807104 26.944961968608844 24.727039177906228 26 20.10435410330313 26.154609680621242 29.037617371826514 24.70341884424911 27 22.296533384289557 26.15646745967293 28.80088324124057 22.746115914796945 28 17.339182683376062 26.886840023991887 30.526759980254464 25.247217312377586 29 20.314548533150738 24.8310748048005 31.515098435750037 23.33927822629872 30 24.15245465692129 25.164148049066597 29.482422756201 21.200974537811113 31 21.96478712506038 28.606878028843347 27.470182646220483 21.958152199875794 32 23.06061136854621 26.19256145267706 28.185427581118596 22.561399597658134 33 23.225953704146033 24.73898204323848 28.044236373190657 23.99082787942483 34 18.557354947265615 26.150097931495726 31.43813330360887 23.854413817629794 35 19.258799237779794 25.179806472502214 29.964383721609156 25.597010568108836 36 23.09166281841006 26.311459311984798 27.807236845597327 22.789641024007814 37 20.738652950949323 28.265312080340983 28.980822412246482 22.01521255646321 38 19.44882349506627 27.265561553527924 28.301936867359885 24.983678084045923 39 20.703620545974726 24.307711906240545 30.551972695955882 24.43669485182885 40 22.264420346396175 23.185878756031148 30.859302430505792 23.690398467066885 41 19.549143563857175 24.458722803441667 27.327399056248243 28.664734576452915 42 20.254038015467337 23.399257949967357 29.656523193044475 26.69018084152083 43 22.440643959298715 22.660392681412127 29.20216351640419 25.69679984288497 44 21.06827603411944 23.078658365048277 29.641395563623625 26.211670037208663 45 21.018912190746136 22.748504487863393 28.83007691205274 27.40250640933773 46 22.19276315440267 24.220396290811426 29.40837699114105 24.178463563644854 47 18.79249669580726 24.69227216993901 32.1419661671895 24.37326496706423 48 19.940869546754993 23.141822852805515 30.286575688572537 26.630731911866963 49 21.633040865831195 21.33314224748802 32.697707500650225 24.336109386030564 50 19.813213586203602 22.282732739905626 31.68919887259351 26.21485480129726 51 19.275519249244947 22.361821048105863 28.207455532731412 30.15520416991778 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 123.0 1 259.5 2 396.0 3 653.0 4 910.0 5 665.0 6 420.0 7 396.5 8 373.0 9 414.5 10 456.0 11 498.5 12 541.0 13 568.0 14 595.0 15 617.5 16 640.0 17 605.5 18 571.0 19 567.0 20 563.0 21 769.5 22 976.0 23 1042.5 24 1109.0 25 1459.5 26 2163.0 27 2516.0 28 3035.5 29 3555.0 30 4178.5 31 4802.0 32 5594.5 33 6387.0 34 7405.0 35 8423.0 36 9574.0 37 10725.0 38 11520.5 39 12316.0 40 14356.5 41 16397.0 42 19659.5 43 22922.0 44 29549.5 45 36177.0 46 41674.5 47 47172.0 48 45890.5 49 44609.0 50 38463.5 51 32318.0 52 28113.0 53 23908.0 54 22352.0 55 20796.0 56 19216.5 57 17637.0 58 16441.5 59 15246.0 60 13582.0 61 11918.0 62 10626.0 63 9334.0 64 8425.5 65 7517.0 66 6111.5 67 4706.0 68 4026.5 69 3347.0 70 2700.0 71 2053.0 72 1635.0 73 1217.0 74 955.5 75 508.5 76 323.0 77 256.0 78 189.0 79 124.0 80 59.0 81 46.5 82 34.0 83 21.5 84 9.0 85 5.5 86 2.0 87 2.0 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 376794.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.18275658250525 #Duplication Level Percentage of deduplicated Percentage of total 1 69.90154765255981 23.195260404952833 2 12.473194652832158 8.27789963942271 3 4.731309297586046 4.709936542150249 4 2.4208333603299237 3.213196964905443 5 1.4078872882651987 2.335879059105374 6 0.9363448525856337 1.864230199237851 7 0.7123417103346656 1.6546223104320472 8 0.5448843573642248 1.4464611996825498 9 0.49416984239824874 1.4758125831644462 >10 6.210082000956744 44.622613824220295 >50 0.1167005903565804 2.5619577092590333 >100 0.046680236142632156 3.0351974737547076 >500 0.0016096633152631777 0.31860893851204275 >1k 0.0024144949728947666 1.2883231512004145 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 2112 0.5605184795936241 Illumina PCR Primer Index 2 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 1604 0.42569679984288494 RNA PCR Primer, Index 10 (95% over 23bp) CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT 1108 0.29405988418074597 TruSeq Adapter, Index 10 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 672 0.17834678896160766 Illumina PCR Primer Index 2 (95% over 22bp) ACTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 521 0.13827184084672262 TruSeq Adapter, Index 10 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 428 0.11358991916007155 No Hit GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC 418 0.1109359490862381 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGC 410 0.10881277302717135 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG 400 0.1061588029533379 No Hit GCCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG 397 0.10536261193118787 Illumina PCR Primer Index 2 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6539700738334476E-4 0.0 0.0 0.30467576447607975 0.0 2 2.6539700738334476E-4 0.0 0.0 1.6608544722049714 0.0 3 2.6539700738334476E-4 0.0 0.0 2.309484758249866 0.0 4 5.307940147666895E-4 0.0 0.0 3.17706757538602 0.0 5 5.307940147666895E-4 0.0 0.0 5.508845682256087 0.0 6 5.307940147666895E-4 0.0 0.0 6.608385483845284 0.0 7 5.307940147666895E-4 0.0 0.0 7.799752649989118 0.0 8 5.307940147666895E-4 0.0 0.0 9.509970965567392 0.0 9 5.307940147666895E-4 0.0 0.0 10.14135044613237 0.0 10 5.307940147666895E-4 0.0 0.0 11.601564780755533 0.0 11 5.307940147666895E-4 0.0 0.0 13.734029735080707 0.0 12 5.307940147666895E-4 0.0 0.0 15.479280455633582 0.0 13 5.307940147666895E-4 0.0 0.0 16.181255540162528 0.0 14 5.307940147666895E-4 0.0 0.0 16.46947669018084 0.0 15 5.307940147666895E-4 0.0 0.0 17.03663009495905 0.0 16 5.307940147666895E-4 0.0 0.0 18.14439720377713 0.0 17 5.307940147666895E-4 0.0 0.0 19.384332022272115 0.0 18 5.307940147666895E-4 0.0 0.0 20.710255471159307 0.0 19 5.307940147666895E-4 0.0 0.0 21.538824928210108 0.0 20 5.307940147666895E-4 0.0 0.0 22.329708010212478 0.0 21 5.307940147666895E-4 0.0 0.0 23.379087777406223 0.0 22 5.307940147666895E-4 0.0 0.0 24.41758626729725 0.0 23 5.307940147666895E-4 0.0 0.0 25.33798308890269 0.0 24 5.307940147666895E-4 0.0 0.0 26.07419438738409 0.0 25 5.307940147666895E-4 0.0 0.0 26.735829126790765 0.0 26 5.307940147666895E-4 0.0 0.0 27.362696858230226 0.0 27 5.307940147666895E-4 0.0 0.0 28.07236845597329 0.0 28 5.307940147666895E-4 0.0 0.0 28.737984150490718 0.0 29 5.307940147666895E-4 0.0 0.0 29.425097002606197 0.0 30 5.307940147666895E-4 0.0 0.0 30.18705181080378 0.0 31 5.307940147666895E-4 0.0 0.0 30.844174801084943 0.0 32 5.307940147666895E-4 0.0 0.0 31.456976491133087 0.0 33 5.307940147666895E-4 0.0 0.0 32.04138070139121 0.0 34 5.307940147666895E-4 0.0 0.0 32.68231447422199 0.0 35 5.307940147666895E-4 0.0 0.0 33.346072389687734 0.0 36 5.307940147666895E-4 0.0 0.0 33.97055154806075 0.0 37 5.307940147666895E-4 0.0 0.0 34.58733419321964 0.0 38 5.307940147666895E-4 0.0 0.0 35.26011560693642 0.0 39 5.307940147666895E-4 0.0 0.0 36.15238034575922 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGGTCCG 30 2.1616033E-6 45.000004 7 CTACGGG 65 0.0 45.000004 3 GCGTGAA 30 2.1616033E-6 45.000004 36 CGAACCC 25 3.8857976E-5 45.0 19 AATTTAC 20 7.027243E-4 45.0 15 CGTATGG 25 3.8857976E-5 45.0 2 CACGGGT 20 7.027243E-4 45.0 4 AACCCGC 20 7.027243E-4 45.0 21 TGGAACG 20 7.027243E-4 45.0 1 TAACGCG 20 7.027243E-4 45.0 1 TCGATAG 20 7.027243E-4 45.0 1 ACGGGCC 20 7.027243E-4 45.0 5 GTATGCG 25 3.8857976E-5 45.0 1 TTGACGG 40 6.7939254E-9 45.0 2 CCATACG 25 3.8857976E-5 45.0 2 GTTCCGA 20 7.027243E-4 45.0 15 CACACGA 20 7.027243E-4 45.0 27 TAGGACG 20 7.027243E-4 45.0 1 GACCTAT 25 3.8857976E-5 45.0 33 TACGGGA 65 0.0 41.538464 4 >>END_MODULE