SRR2935925.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935925.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	227223
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	1366	0.6011715363321495	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	1034	0.4550595670332669	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGC	952	0.41897167100161514	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCG	849	0.37364175281551604	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	788	0.3467958789383117	No Hit
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT	781	0.3437152048868292	TruSeq Adapter, Index 16 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	437	0.19232208007111956	TruSeq Adapter, Index 13 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	346	0.15227331740184752	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	339	0.14919264335036508	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	328	0.1443515841266069	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	282	0.12410715464543642	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	280	0.12322696205929856	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCC	276	0.12146657688702288	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACAT	20	7.02133E-4	45.0	11
CTATGCC	25	3.880897E-5	45.0	9
TAGCGCG	25	3.880897E-5	45.0	1
TCCTCGA	20	7.02133E-4	45.0	38
GTCTACG	20	7.02133E-4	45.0	40
TATGCCC	25	3.880897E-5	45.0	10
CAGGGTC	20	7.02133E-4	45.0	5
AGACGAT	20	7.02133E-4	45.0	18
GTAGACG	25	3.880897E-5	45.0	1
CACTAGG	25	3.880897E-5	45.0	2
CTACGCA	20	7.02133E-4	45.0	42
CTACGAT	20	7.02133E-4	45.0	22
CGAGGGC	20	7.02133E-4	45.0	4
ACCAGGT	20	7.02133E-4	45.0	3
CGAATAT	25	3.880897E-5	45.0	14
GATTGCG	20	7.02133E-4	45.0	1
TGTAGCG	25	3.880897E-5	45.0	1
GTCCCGC	25	3.880897E-5	45.0	15
GCCCGAA	25	3.880897E-5	45.0	25
CCCGCGG	25	3.880897E-5	45.0	17