SRR2935923.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935923.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	853663
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7602	0.8905153438769162	No Hit
CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	3080	0.36079811354129204	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT	2198	0.2574786537544675	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2080	0.24365586888502838	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	1920	0.2249131097400262	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	1805	0.21144175160455592	TruSeq Adapter, Index 21 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1803	0.21120746711524338	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	1375	0.16107058640236252	No Hit
CGTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	1369	0.16036773293442494	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC	863	0.10109375713835554	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACGC	20	7.032264E-4	45.000004	36
GCATCCG	20	7.032264E-4	45.000004	1
TTGCGCG	90	0.0	45.0	1
TCGCGCG	25	3.8899598E-5	45.0	1
CGTTTTT	3995	0.0	42.972466	1
TATAGCG	45	1.9272193E-8	40.0	1
ACGGGCC	85	0.0	39.705883	5
GCGATAT	40	3.4568257E-7	39.375004	9
GTACGAG	40	3.4568257E-7	39.375004	1
AGGCGTC	35	6.2464005E-6	38.571426	35
GCTACGA	140	0.0	38.571426	10
TTAGCGG	200	0.0	38.25	2
CATACGA	165	0.0	38.181816	18
TAGGGCG	130	0.0	38.076927	5
TCTCGGA	30	1.1396757E-4	37.500004	36
TTACGAG	30	1.1396757E-4	37.500004	1
GATTCGA	30	1.1396757E-4	37.500004	9
AATGCGG	115	0.0	37.173912	2
TACGGGA	370	0.0	37.094597	4
CTACGAA	140	0.0	36.964283	11