##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935923.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 853663 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13952344192029 33.0 31.0 34.0 30.0 34.0 2 32.264618473566266 34.0 31.0 34.0 30.0 34.0 3 32.28713555583409 34.0 31.0 34.0 30.0 34.0 4 35.84554209330848 37.0 35.0 37.0 35.0 37.0 5 35.89258407591755 37.0 35.0 37.0 35.0 37.0 6 35.92264511874124 37.0 35.0 37.0 35.0 37.0 7 36.106914555275324 37.0 35.0 37.0 35.0 37.0 8 35.89645328425854 37.0 35.0 37.0 35.0 37.0 9 37.63260912092945 39.0 38.0 39.0 35.0 39.0 10 37.272500975209184 39.0 37.0 39.0 34.0 39.0 11 37.19630931643986 39.0 37.0 39.0 34.0 39.0 12 37.248558271823896 39.0 37.0 39.0 34.0 39.0 13 37.33642198385077 39.0 37.0 39.0 34.0 39.0 14 38.59584871313387 40.0 38.0 41.0 34.0 41.0 15 38.715001118708436 40.0 38.0 41.0 35.0 41.0 16 38.775495716693825 40.0 38.0 41.0 35.0 41.0 17 38.74227300468686 40.0 38.0 41.0 35.0 41.0 18 38.65008908667706 40.0 38.0 41.0 35.0 41.0 19 38.60484875179081 40.0 38.0 41.0 35.0 41.0 20 38.422875303251985 40.0 37.0 41.0 34.0 41.0 21 38.414862773717495 40.0 37.0 41.0 34.0 41.0 22 38.404418371183944 40.0 37.0 41.0 34.0 41.0 23 38.43268948050929 40.0 37.0 41.0 34.0 41.0 24 38.37073294731059 40.0 37.0 41.0 34.0 41.0 25 38.29653270670042 40.0 37.0 41.0 34.0 41.0 26 38.163076061630875 40.0 37.0 41.0 34.0 41.0 27 38.117053216550325 40.0 37.0 41.0 34.0 41.0 28 38.09255760177025 40.0 37.0 41.0 34.0 41.0 29 38.04509976419266 40.0 37.0 41.0 34.0 41.0 30 37.90230571080157 40.0 37.0 41.0 34.0 41.0 31 37.893620784782755 40.0 37.0 41.0 34.0 41.0 32 37.734918814567344 40.0 37.0 41.0 33.0 41.0 33 37.56643195265579 40.0 37.0 41.0 33.0 41.0 34 37.42034151650007 40.0 37.0 41.0 33.0 41.0 35 37.31272762202415 40.0 36.0 41.0 32.0 41.0 36 37.210061815962504 40.0 36.0 41.0 32.0 41.0 37 37.180382656856395 40.0 36.0 41.0 32.0 41.0 38 37.0904279557624 40.0 36.0 41.0 31.0 41.0 39 37.05935831821222 40.0 36.0 41.0 31.0 41.0 40 37.006152310689345 40.0 36.0 41.0 31.0 41.0 41 36.90114248831213 40.0 35.0 41.0 31.0 41.0 42 36.884530546597425 40.0 35.0 41.0 31.0 41.0 43 36.83559788815961 40.0 35.0 41.0 31.0 41.0 44 36.77955703831606 40.0 35.0 41.0 31.0 41.0 45 36.69209043849857 40.0 35.0 41.0 31.0 41.0 46 36.63905663007533 39.0 35.0 41.0 31.0 41.0 47 36.62067818331121 39.0 35.0 41.0 31.0 41.0 48 36.55361073397816 39.0 35.0 41.0 31.0 41.0 49 36.503371939512434 39.0 35.0 41.0 31.0 41.0 50 36.385832582646785 39.0 35.0 41.0 30.0 41.0 51 35.45499922100407 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 10.0 10 21.0 11 13.0 12 20.0 13 21.0 14 28.0 15 37.0 16 47.0 17 75.0 18 186.0 19 262.0 20 464.0 21 769.0 22 1299.0 23 1897.0 24 3143.0 25 5705.0 26 8483.0 27 10059.0 28 10438.0 29 10580.0 30 11523.0 31 13750.0 32 17018.0 33 23276.0 34 40977.0 35 52718.0 36 56880.0 37 83732.0 38 166584.0 39 333302.0 40 338.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.876699587542156 21.57959288384292 25.10756586615561 14.436141662459306 2 34.76078967929968 23.385457727463884 25.09362593904152 16.760126654194924 3 30.205479211351555 22.944651460822364 30.311492942765472 16.538376385060616 4 26.770517171295932 24.741144924870824 30.31371864541394 18.174619258419305 5 24.51517753492889 28.971034237163845 28.057793297823615 18.45599493008365 6 24.44992930465535 32.62013230045112 27.706483706099476 15.223454688794055 7 78.27433073707071 5.035476528794149 11.617933540518917 5.072259193616216 8 79.8682852601085 4.135706947589388 11.193175761395304 4.80283203090681 9 73.5920380759152 7.084997241300138 13.108217177035902 6.214747505748756 10 35.67742774373494 30.71797653172271 20.206802918716168 13.397792805826187 11 23.780812803178772 25.363053101750925 32.063238069355236 18.792896025715066 12 23.023605333720685 22.10790440724267 34.740992639952765 20.12749761908388 13 22.625438844134045 22.414114234774143 35.70050476593222 19.25994215515959 14 18.737839170726623 26.12682053690976 34.28484073926128 20.850499553102335 15 18.039319965841322 27.27258883189268 35.57117972783171 19.116911474434293 16 20.764165718790668 27.532293188295615 32.953987697721466 18.749553395192248 17 20.7030174670801 26.45329597276677 31.312707707842556 21.53097885231057 18 20.965884664088758 26.514327082232686 32.459178856293406 20.06060939738515 19 20.877559411617934 28.003556438547765 31.1816255360722 19.937258613762104 20 21.84175722738364 27.084926955953343 31.402555809493908 19.670760007169104 21 21.892011250341177 27.07133845557322 32.64684073223274 18.389809561852864 22 20.74811723127276 24.780036150096702 32.10564356192081 22.366203056709733 23 19.69758558119539 25.979924162110805 32.41150196271831 21.910988293975493 24 20.220391419096295 24.8753899372469 33.024273044515226 21.879945599141582 25 20.224491397659264 27.44841934112173 30.234296203536992 22.092793057682012 26 19.942881441505605 27.922962574224254 30.27201600631631 21.862139977953827 27 20.38146200549866 27.36032837314022 30.914189791521945 21.344019829839176 28 19.047211838863813 27.609021358545466 31.80177657928246 21.54199022330826 29 20.71520026052435 25.581171961300885 31.59537194419812 22.10825583397664 30 21.5941185221803 27.250448947652643 30.654134008385043 20.501298521782015 31 20.991304531179168 28.37454592737415 29.73374739212078 20.900402149325906 32 21.532618843735758 29.412777641762617 29.520079937867756 19.534523576633873 33 21.15635795389984 29.269161249814037 29.139601927224206 20.43487886906191 34 21.723326418036155 26.6072208822451 30.561825919595908 21.107626780122835 35 21.36615971407921 27.80277463120693 29.972014717751616 20.859050936962245 36 22.2216495268039 28.4633397488236 29.825001200708005 19.49000952366449 37 22.08564738075798 28.411680018930184 30.35823269838332 19.14443990192851 38 19.998992576695958 28.46181689964307 30.537460332707404 21.001730190953573 39 22.79810651275738 27.102849719385752 28.970799952674533 21.128243815182337 40 22.657418676925204 25.861141926029358 30.985412276272957 20.496027120772485 41 21.41817087070659 26.271725493549564 30.441520834333925 21.868582801409925 42 22.245077975735157 26.226040018133617 30.340192792706254 21.18868921342497 43 21.729886383736908 26.407259070616863 30.448197942279332 21.414656603366904 44 21.284862996287764 26.521472759156715 29.076696541843795 23.116967702711726 45 21.179552118341782 25.73474544404525 29.154830419029526 23.930872018583447 46 21.96967655854828 26.60944658489357 29.316135289921196 22.10474156663695 47 20.810085478695925 25.500929523711346 31.79861373867674 21.890371258915987 48 20.4879443058912 24.865081419717146 32.25265707896441 22.394317195427234 49 21.46327063489925 24.392646747018436 31.929461625957785 22.214620992124527 50 19.830073459901623 24.131536683679624 32.56542687219664 23.47296298422211 51 20.227419953775673 23.370932089126505 30.6579997024587 25.743648254639123 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 307.0 1 541.5 2 776.0 3 6638.0 4 12500.0 5 8220.0 6 3940.0 7 3872.0 8 3804.0 9 3755.5 10 3707.0 11 3719.5 12 3732.0 13 3590.5 14 3449.0 15 3307.5 16 3166.0 17 3062.0 18 2958.0 19 2881.5 20 2805.0 21 3052.5 22 3300.0 23 3873.5 24 4447.0 25 5284.0 26 7037.5 27 7954.0 28 9862.5 29 11771.0 30 13562.0 31 15353.0 32 17667.0 33 19981.0 34 23418.5 35 26856.0 36 29206.0 37 31556.0 38 34979.5 39 38403.0 40 42165.5 41 45928.0 42 51707.0 43 57486.0 44 69479.0 45 81472.0 46 89532.5 47 97593.0 48 93681.0 49 89769.0 50 76598.5 51 63428.0 52 55905.5 53 48383.0 54 42837.0 55 37291.0 56 34415.5 57 31540.0 58 29134.5 59 26729.0 60 24507.0 61 22285.0 62 19811.0 63 17337.0 64 14357.0 65 11377.0 66 8898.0 67 6419.0 68 5123.0 69 3827.0 70 3100.0 71 2373.0 72 1984.5 73 1596.0 74 1252.0 75 749.0 76 590.0 77 416.5 78 243.0 79 160.5 80 78.0 81 73.0 82 68.0 83 49.5 84 31.0 85 17.0 86 3.0 87 1.5 88 0.0 89 10.5 90 21.0 91 10.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 853663.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.653875559378044 #Duplication Level Percentage of deduplicated Percentage of total 1 72.9679528445781 26.7455826338773 2 10.560537332869076 7.741692424782985 3 3.7842764058506324 4.161251893870185 4 2.0476697076053325 3.0022012259709556 5 1.2448586779129345 2.281444753461629 6 1.0115557084951206 2.2246462236335183 7 0.8243199818315434 2.115016542461351 8 0.7108812248796842 2.0845241563390546 9 0.6305543447785625 2.080103443824473 >10 6.118040627176743 40.75407519150035 >50 0.06451505006214629 1.6115608687669651 >100 0.029999469798997147 1.9569276538318907 >500 0.0019354496644449746 0.49410915747372247 >1k 0.0025805995525932995 1.8480320965097587 >5k 3.2257494407416244E-4 0.8988317336959172 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7602 0.8905153438769162 No Hit CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG 3080 0.36079811354129204 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT 2198 0.2574786537544675 No Hit CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 2080 0.24365586888502838 TruSeq Adapter, Index 15 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC 1920 0.2249131097400262 No Hit CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 1805 0.21144175160455592 TruSeq Adapter, Index 21 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 1803 0.21120746711524338 TruSeq Adapter, Index 15 (95% over 22bp) CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT 1375 0.16107058640236252 No Hit CGTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT 1369 0.16036773293442494 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC 863 0.10109375713835554 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.199957125938456E-4 0.0 0.0 0.22069598893240072 0.0 2 8.199957125938456E-4 0.0 0.0 0.8452984374395985 0.0 3 8.199957125938456E-4 0.0 0.0 1.5145320811608327 0.0 4 9.371379572501093E-4 0.0 0.0 2.1911456862954117 0.0 5 9.371379572501093E-4 0.0 0.0 3.8994310401177046 0.0 6 9.371379572501093E-4 0.0 0.0 5.328449282679465 0.0 7 9.371379572501093E-4 0.0 0.0 6.429234955714374 0.0 8 9.371379572501093E-4 0.0 0.0 7.921627152635174 0.0 9 9.371379572501093E-4 0.0 0.0 8.547049596854965 0.0 10 9.371379572501093E-4 0.0 0.0 9.7567775574202 0.0 11 9.371379572501093E-4 0.0 0.0 11.384820473652953 0.0 12 9.371379572501093E-4 0.0 0.0 12.697047898292418 0.0 13 9.371379572501093E-4 0.0 0.0 13.297284759911113 0.0 14 0.0010542802019063728 0.0 0.0 13.58768038441399 0.0 15 0.0010542802019063728 0.0 0.0 13.966401261387691 0.0 16 0.0010542802019063728 0.0 0.0 14.705334540679402 0.0 17 0.0010542802019063728 0.0 0.0 15.694600796801549 0.0 18 0.0010542802019063728 0.0 0.0 16.735292498327794 0.0 19 0.0010542802019063728 0.0 0.0 17.407454698165434 0.0 20 0.0010542802019063728 0.0 0.0 18.035454271767666 0.0 21 0.0010542802019063728 0.0 0.0 18.78563320654638 0.0 22 0.0010542802019063728 0.0 0.0 19.657640075767603 0.0 23 0.0010542802019063728 0.0 0.0 20.486655741199982 0.0 24 0.0010542802019063728 0.0 0.0 21.14159803107315 0.0 25 0.0011714224465626366 0.0 0.0 21.72801210782241 0.0 26 0.0011714224465626366 0.0 0.0 22.273074972208004 0.0 27 0.0011714224465626366 0.0 0.0 22.832663474930975 0.0 28 0.0012885646912189001 0.0 0.0 23.396703382950882 0.0 29 0.0012885646912189001 0.0 0.0 24.001743076600484 0.0 30 0.0012885646912189001 0.0 0.0 24.686205212127035 0.0 31 0.0014057069358751639 0.0 0.0 25.305419117380044 0.0 32 0.0014057069358751639 0.0 0.0 25.90600740573271 0.0 33 0.0014057069358751639 0.0 0.0 26.487970077185025 0.0 34 0.0014057069358751639 0.0 0.0 27.049198571333186 0.0 35 0.0014057069358751639 0.0 0.0 27.658103959056444 0.0 36 0.0014057069358751639 0.0 0.0 28.23538094072251 0.0 37 0.0014057069358751639 0.0 0.0 28.810197935250795 0.0 38 0.0014057069358751639 0.0 0.0 29.386186352225643 0.0 39 0.0014057069358751639 0.0 0.0 29.959597639818053 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGACGC 20 7.032264E-4 45.000004 36 GCATCCG 20 7.032264E-4 45.000004 1 TTGCGCG 90 0.0 45.0 1 TCGCGCG 25 3.8899598E-5 45.0 1 CGTTTTT 3995 0.0 42.972466 1 TATAGCG 45 1.9272193E-8 40.0 1 ACGGGCC 85 0.0 39.705883 5 GCGATAT 40 3.4568257E-7 39.375004 9 GTACGAG 40 3.4568257E-7 39.375004 1 AGGCGTC 35 6.2464005E-6 38.571426 35 GCTACGA 140 0.0 38.571426 10 TTAGCGG 200 0.0 38.25 2 CATACGA 165 0.0 38.181816 18 TAGGGCG 130 0.0 38.076927 5 TCTCGGA 30 1.1396757E-4 37.500004 36 TTACGAG 30 1.1396757E-4 37.500004 1 GATTCGA 30 1.1396757E-4 37.500004 9 AATGCGG 115 0.0 37.173912 2 TACGGGA 370 0.0 37.094597 4 CTACGAA 140 0.0 36.964283 11 >>END_MODULE