SRR2935920.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935920.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335986
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	883	0.26280856940467756	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	764	0.22739042698207662	No Hit
GCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	498	0.148220461566851	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	418	0.12440994565249744	No Hit
CGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG	413	0.12292178840785033	No Hit
CTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT	402	0.1196478424696267	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	356	0.1059567958188734	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCC	346	0.10298048132957921	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCAACG	25	3.8848935E-5	45.0	1
GTCGAAC	20	7.026151E-4	45.0	20
GCGCGAC	55	1.8189894E-12	45.0	9
TTCACGG	20	7.026151E-4	45.0	2
CCAGCGC	20	7.026151E-4	45.0	42
TATTGCG	25	3.8848935E-5	45.0	1
TCGGAAA	25	3.8848935E-5	45.0	42
CGGATGG	20	7.026151E-4	45.0	2
TTGCGGT	20	7.026151E-4	45.0	12
CGAATAT	45	3.8380676E-10	45.0	14
TCATCGA	20	7.026151E-4	45.0	16
CCGGTAT	20	7.026151E-4	45.0	19
CGTCATA	20	7.026151E-4	45.0	38
TCCGGTA	20	7.026151E-4	45.0	18
GCCAATT	30	2.1608994E-6	44.999996	42
GGCGATA	140	0.0	41.785713	8
GCGATAC	60	3.6379788E-12	41.249996	9
CGTTTTT	580	0.0	41.12069	1
CCATCTA	55	6.002665E-11	40.909092	13
TAAGGGA	165	0.0	40.90909	4