SRR2935919.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935919.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	646339
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	1928	0.2982954765223822	TruSeq Adapter, Index 23 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	1549	0.2396575171852542	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	1465	0.22666124123718356	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	1314	0.2032988880448186	TruSeq Adapter, Index 23 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	1259	0.19478942165024857	No Hit
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	1096	0.1695704576081592	TruSeq Adapter, Index 22 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	778	0.12037027009046336	No Hit
TCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	771	0.1192872470947908	TruSeq Adapter, Index 23 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	80	0.0	45.000004	1
GATCGCG	20	7.030992E-4	45.000004	1
GATCGAG	20	7.030992E-4	45.000004	1
TTTCGCG	20	7.030992E-4	45.000004	1
ACTAGCG	20	7.030992E-4	45.000004	1
CCGTAAG	20	7.030992E-4	45.000004	1
ACGCTAG	20	7.030992E-4	45.000004	1
CGTGTAC	20	7.030992E-4	45.000004	18
ATACGCG	20	7.030992E-4	45.000004	1
GCGCTTC	20	7.030992E-4	45.000004	19
CGTCATA	40	6.8066583E-9	45.000004	38
TGTAACG	40	6.8066583E-9	45.000004	1
TGCCGTA	20	7.030992E-4	45.000004	42
ATTTCGC	20	7.030992E-4	45.000004	20
CGGGTTA	25	3.8889037E-5	45.0	6
TGCGAGC	25	3.8889037E-5	45.0	1
CTAGCGG	125	0.0	41.399998	2
TATTGCG	50	1.0804797E-9	40.5	1
GTCATAC	45	1.9261279E-8	40.0	39
GCGATAC	45	1.9261279E-8	40.0	9