SRR2935917.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935917.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	783937
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	7406	0.9447187720441822	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC	6973	0.8894847417585852	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG	6002	0.7656227477463112	No Hit
GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	2134	0.2722157520310943	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1581	0.2016743692414059	No Hit
GAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT	1338	0.17067698042062054	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTTTGCGT	1292	0.1648091619607188	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT	1263	0.16110988510556334	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC	1064	0.13572519220294488	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	1044	0.1331739667855963	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTA	1007	0.1284541997635014	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	816	0.1040899970278224	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTGCG	20	7.031911E-4	45.000004	1
GCGATCG	30	2.1646138E-6	45.000004	33
CCGCGTA	20	7.031911E-4	45.000004	40
CGGTCGT	20	7.031911E-4	45.000004	29
CGATCGC	30	2.1646138E-6	45.000004	34
TTCGAAT	20	7.031911E-4	45.000004	16
CTACGCG	25	3.8896673E-5	45.0	1
ATAACGG	45	3.8380676E-10	45.0	2
GCGTAAC	25	3.8896673E-5	45.0	32
CCGTCGA	100	0.0	42.75	41
CCGATGA	950	0.0	42.39474	18
CGAATAT	60	3.6379788E-12	41.250004	14
TACGGGA	115	0.0	41.08696	4
CGATGAA	1030	0.0	40.631065	19
TACGGCT	805	0.0	40.52795	7
GCGATAT	50	1.0804797E-9	40.5	9
CGTAAGC	50	1.0804797E-9	40.5	43
CACCCGT	90	0.0	40.0	38
CGTTTTT	930	0.0	39.67742	1
GATGAAT	1095	0.0	39.65753	20