SRR2935916.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935916.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	368433
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	2127	0.5773098500948612	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	1936	0.5254686740872831	Illumina Single End Adapter 1 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGC	1472	0.39952990095892604	No Hit
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT	1301	0.3531171203448117	Illumina Single End Adapter 1 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC	1301	0.3531171203448117	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCG	1253	0.3400889714004989	No Hit
TCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	587	0.15932340479815868	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	543	0.14738093493253862	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG	516	0.14005260115136267	Illumina Single End Adapter 1 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	470	0.12756729174639622	Illumina Single End Adapter 1 (95% over 22bp)
TGCGAAGGACATAGGCTTCATTAAGTTGGACTAAGCGACCTTGAATGGATT	432	0.11725334049881525	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC	393	0.1066679694815611	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGAACG	35	1.2089185E-7	45.000004	1
GTCGAGG	20	7.02704E-4	45.0	2
CGAAAGG	25	3.8856288E-5	45.0	2
CGACGGT	25	3.8856288E-5	45.0	28
ACGTTAG	20	7.02704E-4	45.0	1
GCGGTAG	20	7.02704E-4	45.0	1
CCGATAC	25	3.8856288E-5	45.0	11
CCCTACA	25	3.8856288E-5	45.0	27
TTGTACC	50	2.1827873E-11	45.0	20
GCCCTCG	50	2.1827873E-11	45.0	13
ACGTGCG	25	3.8856288E-5	45.0	1
ACGTGAG	25	3.8856288E-5	45.0	44
TCCACCG	20	7.02704E-4	45.0	18
ATGACGG	20	7.02704E-4	45.0	2
CTACCGG	25	3.8856288E-5	45.0	2
ACGTCCG	20	7.02704E-4	45.0	15
TATAGCG	25	3.8856288E-5	45.0	1
TGTAGCG	25	3.8856288E-5	45.0	1
CGATGGA	20	7.02704E-4	45.0	10
ACGTAAG	20	7.02704E-4	45.0	1