SRR2935912.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935912.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	306583
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	1560	0.5088344754927703	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	1190	0.3881493755361517	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	1110	0.3620552998698558	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	577	0.18820352074315927	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	484	0.15786915778109029	No Hit
TCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	474	0.1546073983228033	No Hit
ACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	440	0.14351741616462751	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	381	0.1242730353607343	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	353	0.11514010887753072	No Hit
CGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTG	324	0.10568100644849844	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCC	322	0.10502865455684104	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	315	0.10274542293604016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGA	45	3.8198777E-10	45.000004	4
ACAACGG	20	7.025186E-4	45.0	2
TTAGGCG	20	7.025186E-4	45.0	1
TTGGACG	35	1.2080272E-7	45.0	1
GGTCGAT	20	7.025186E-4	45.0	8
GCGCGCC	25	3.8840924E-5	45.0	16
TTTCGTG	20	7.025186E-4	45.0	15
CGTGACG	20	7.025186E-4	45.0	18
AAGACGC	20	7.025186E-4	45.0	38
GCAAACG	20	7.025186E-4	45.0	10
TTCGTGA	20	7.025186E-4	45.0	16
TTCGTAC	20	7.025186E-4	45.0	25
GTCTAGT	20	7.025186E-4	45.0	44
TTCAAGT	20	7.025186E-4	45.0	39
TGTTGCG	20	7.025186E-4	45.0	1
TCGTGAC	20	7.025186E-4	45.0	17
CGGGCAT	20	7.025186E-4	45.0	6
GGACGTA	20	7.025186E-4	45.0	8
TCGTACA	20	7.025186E-4	45.0	26
CTCGAAT	25	3.8840924E-5	45.0	39