SRR2935910.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935910.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	604174
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	1692	0.2800517731646844	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	1600	0.2648243717869355	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	1342	0.2221214418362922	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	998	0.16518420190210104	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	687	0.11370896463601546	No Hit
TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	609	0.10079877651140234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTCGCA	20	7.030627E-4	45.0	10
ACAGACG	20	7.030627E-4	45.0	1
TATCGCG	20	7.030627E-4	45.0	32
AATACGA	20	7.030627E-4	45.0	27
GCTACGA	90	0.0	42.5	10
TATTGCG	60	3.6379788E-12	41.249996	1
TGTAACG	60	3.6379788E-12	41.249996	1
CGTTTTT	715	0.0	39.65035	1
TATAGCG	35	6.24337E-6	38.571426	1
TGGGCGC	70	0.0	38.571426	6
TACGTAG	35	6.24337E-6	38.571426	1
TAGTACG	35	6.24337E-6	38.571426	1
TAATCGT	35	6.24337E-6	38.571426	21
CCATCGA	100	0.0	38.25	31
TAGGGTC	195	0.0	38.076927	5
TACGAGG	65	9.094947E-12	38.07692	2
CCGATAA	30	1.1392811E-4	37.499996	11
CGACCCG	60	1.546141E-10	37.499996	32
TACGGAG	30	1.1392811E-4	37.499996	19
ATCCGCT	30	1.1392811E-4	37.499996	1