##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935910.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 604174 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.105568925508216 33.0 31.0 34.0 30.0 34.0 2 32.21952947329743 33.0 31.0 34.0 30.0 34.0 3 32.27281544720561 34.0 31.0 34.0 30.0 34.0 4 35.82429896023331 37.0 35.0 37.0 35.0 37.0 5 35.866376242605604 37.0 35.0 37.0 35.0 37.0 6 35.90192063875639 37.0 35.0 37.0 35.0 37.0 7 36.08379043123339 37.0 35.0 37.0 35.0 37.0 8 35.8478368814282 37.0 35.0 37.0 35.0 37.0 9 37.59313873155747 39.0 38.0 39.0 35.0 39.0 10 37.183447152641456 39.0 37.0 39.0 34.0 39.0 11 37.13087289423245 39.0 37.0 39.0 34.0 39.0 12 37.10265420226624 39.0 37.0 39.0 34.0 39.0 13 37.137606053885136 39.0 37.0 39.0 34.0 39.0 14 38.3398507714665 40.0 38.0 41.0 34.0 41.0 15 38.462156597271644 40.0 38.0 41.0 34.0 41.0 16 38.538937458414296 40.0 38.0 41.0 35.0 41.0 17 38.490486184443554 40.0 38.0 41.0 34.0 41.0 18 38.46723460460066 40.0 38.0 41.0 34.0 41.0 19 38.475957257346394 40.0 37.0 41.0 34.0 41.0 20 38.33694763429078 40.0 37.0 41.0 34.0 41.0 21 38.33050081599009 40.0 37.0 41.0 34.0 41.0 22 38.33188121302803 40.0 37.0 41.0 34.0 41.0 23 38.34303031908026 40.0 37.0 41.0 34.0 41.0 24 38.265559259418644 40.0 37.0 41.0 34.0 41.0 25 38.17452588161689 40.0 37.0 41.0 34.0 41.0 26 38.05732454557793 40.0 37.0 41.0 34.0 41.0 27 38.033056702208306 40.0 37.0 41.0 34.0 41.0 28 38.035880392072485 40.0 37.0 41.0 34.0 41.0 29 38.01940169553804 40.0 37.0 41.0 34.0 41.0 30 37.867139267826815 40.0 36.0 41.0 33.0 41.0 31 37.875489511299726 40.0 36.0 41.0 34.0 41.0 32 37.85245641156356 40.0 36.0 41.0 34.0 41.0 33 37.800532628017756 40.0 36.0 41.0 33.0 41.0 34 37.658196148791575 40.0 36.0 41.0 33.0 41.0 35 37.65543369956337 40.0 36.0 41.0 33.0 41.0 36 37.59118234151089 40.0 36.0 41.0 33.0 41.0 37 37.54601820005495 40.0 36.0 41.0 33.0 41.0 38 37.54355864370198 40.0 36.0 41.0 33.0 41.0 39 37.44193560133339 40.0 35.0 41.0 33.0 41.0 40 37.34215805380569 40.0 35.0 41.0 33.0 41.0 41 37.250796955843846 39.0 35.0 41.0 32.0 41.0 42 37.27405019083906 39.0 35.0 41.0 33.0 41.0 43 37.272060697746014 39.0 35.0 41.0 33.0 41.0 44 37.21155660455432 39.0 35.0 41.0 33.0 41.0 45 37.0961974530516 39.0 35.0 41.0 32.0 41.0 46 37.024456530734525 39.0 35.0 41.0 32.0 41.0 47 36.9953076431624 39.0 35.0 41.0 32.0 41.0 48 36.962245975497126 39.0 35.0 41.0 32.0 41.0 49 36.93626835977715 39.0 35.0 41.0 32.0 41.0 50 36.818858474545415 39.0 35.0 41.0 32.0 41.0 51 35.87143273295441 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 5.0 9 15.0 10 12.0 11 9.0 12 10.0 13 16.0 14 20.0 15 13.0 16 49.0 17 55.0 18 90.0 19 178.0 20 283.0 21 458.0 22 779.0 23 1171.0 24 1642.0 25 2536.0 26 3404.0 27 4111.0 28 4991.0 29 6129.0 30 7556.0 31 9624.0 32 12833.0 33 18420.0 34 35808.0 35 45943.0 36 41095.0 37 62692.0 38 122565.0 39 221428.0 40 230.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.893143365983974 22.949183513358733 25.58335843647691 11.574314684180385 2 30.602607858001175 25.518641980621474 26.67294521114778 17.20580495022957 3 32.080327852572275 24.499895725403608 27.080774743699664 16.339001678324454 4 28.52307447854426 26.11681403039522 26.695786313214402 18.664325177846116 5 25.409732957724103 29.744742408643866 25.218728379572774 19.62679625405926 6 26.228205781778097 33.95925677040058 24.293994776339268 15.518542671482056 7 80.90599727892958 5.686772353659707 8.252755001042745 5.154475366367967 8 82.28473916454531 4.598344185615402 7.960620615915283 5.1562960339240025 9 76.04829072419534 7.575135639732925 10.093449900194315 6.283123735877413 10 39.16206258461966 28.161092665357994 18.031229414042972 14.64561533597937 11 29.18993534975024 24.74452723884179 26.121613972133854 19.943923439274116 12 27.236028031659753 22.129717597910535 30.105896645668302 20.52835772476141 13 24.44229642453995 23.084409458202437 31.537603405641423 20.93569071161619 14 20.111259339196984 27.00712046529642 30.656069278055657 22.225550917450935 15 19.96875072412914 26.342245776878848 33.73663878286719 19.952364716124826 16 22.75950305706634 25.30363769377696 31.345440220863523 20.591419028293174 17 22.200227086898806 25.948319523845782 28.68991383277003 23.161539556485383 18 22.774895973676458 26.821412374580834 29.604716522061526 20.798975129681185 19 23.334999520005827 28.445944380261317 27.664712483489858 20.554343616243003 20 24.430544843041904 28.13196198446143 28.08909353927842 19.348399633218243 21 23.813338541545978 28.398110478107302 28.370138403837302 19.418412576509418 22 22.0280912452373 25.43737400152936 28.622218102731996 23.912316650501346 23 21.614137649087844 27.00579634343749 29.15782539467107 22.222240612803596 24 23.43463968989066 25.184135696008102 28.88174598708319 22.499478627018043 25 21.4376984113848 27.00083088646648 27.30587545971856 24.25559524243016 26 20.187065315621 27.274924111265957 28.468288936630838 24.069721636482207 27 21.05502719415268 27.583278989165372 28.41284133378795 22.948852482894 28 18.985424728637774 27.90090272007733 28.969800090702346 24.143872460582546 29 22.013029359091917 26.135351736420304 27.223283358767507 24.628335545720272 30 22.805019745967222 26.52182980399686 27.866972097442126 22.80617835259379 31 22.452968846722964 26.80171606192918 26.112676149586044 24.63263894176181 32 24.82447109607497 26.904335505996617 25.172053084045327 23.099140313883087 33 24.50866803271905 26.53722272060698 26.204206073084908 22.749903173589065 34 21.682164409590616 25.031034106068784 29.27600327058099 24.010798213759614 35 22.605077345268086 25.20002515831532 27.87839264847544 24.316504847941157 36 22.03785664394694 28.031659753647126 27.141187803513557 22.789295798892372 37 22.24607480626442 27.392274411014046 28.684120799637192 21.67752998308434 38 23.644016458834706 26.658048840234766 26.362438635227598 23.335496065702927 39 24.50966112411325 24.061776905328596 28.57951517278135 22.849046797776797 40 24.21123716015585 23.144822518016333 30.0380354003979 22.60590492142992 41 20.902918695607557 25.358092205225645 28.941496985967618 24.797492113199176 42 21.62075825838252 25.711136195864103 28.694713774508667 23.973391771244707 43 22.383783479593628 24.768361432302616 28.727320275284935 24.12053481281882 44 21.934078593252938 25.05768205847984 27.585761717650875 25.422477630616346 45 23.395412579819723 23.59303776726572 27.079781652305464 25.931768000609097 46 23.314641146424705 25.26176233998815 27.35387487710494 24.069721636482207 47 20.936352772545657 24.364338750095172 30.129234293432024 24.570074183927147 48 21.385726628421615 23.401371128184927 30.396872424169196 24.816029819224266 49 22.797902590975447 22.3899075431912 30.364596953857664 24.447592911975686 50 21.28492785191021 22.030739488955167 30.606083677880875 26.078248981253743 51 20.575198535521224 22.437410414880482 28.992972223233703 27.99441882636459 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 228.0 1 474.5 2 721.0 3 1465.5 4 2210.0 5 1560.0 6 910.0 7 898.0 8 886.0 9 907.5 10 929.0 11 936.5 12 944.0 13 977.5 14 1011.0 15 1024.0 16 1037.0 17 1071.0 18 1105.0 19 1128.5 20 1152.0 21 1533.0 22 1914.0 23 2174.5 24 2435.0 25 2964.5 26 4241.0 27 4988.0 28 6290.5 29 7593.0 30 9208.5 31 10824.0 32 11705.0 33 12586.0 34 14910.0 35 17234.0 36 18548.5 37 19863.0 38 20958.0 39 22053.0 40 24564.5 41 27076.0 42 29313.5 43 31551.0 44 33758.5 45 35966.0 46 39423.5 47 42881.0 48 49260.0 49 55639.0 50 59920.0 51 64201.0 52 62526.5 53 60852.0 54 52677.5 55 44503.0 56 38500.5 57 32498.0 58 29308.5 59 26119.0 60 24365.0 61 22611.0 62 20243.5 63 17876.0 64 14488.0 65 11100.0 66 8761.0 67 6422.0 68 5345.0 69 4268.0 70 3507.5 71 2747.0 72 2277.0 73 1807.0 74 1349.5 75 697.0 76 502.0 77 419.5 78 337.0 79 230.0 80 123.0 81 87.5 82 52.0 83 32.5 84 13.0 85 14.5 86 16.0 87 9.5 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 604174.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.504616387054426 #Duplication Level Percentage of deduplicated Percentage of total 1 71.39752844987026 25.349418585964482 2 11.131763577961348 7.904579910938042 3 4.0525647504300135 4.316542705431498 4 2.174367358292432 3.0880031576282287 5 1.325985379461581 2.3539301116313114 6 1.0493984487538985 2.23550936161063 7 0.8485663154104409 2.1089615055336757 8 0.696949657469951 1.9795944183647673 9 0.6577770464019836 2.1018709530640916 >10 6.559702340439699 43.56509251602404 >50 0.07010761004913733 1.6982977098456344 >100 0.03152489847696899 1.9453744668924107 >500 0.00235260436395291 0.5786841694560163 >1k 0.0014115626183717458 0.7741404276152366 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 1692 0.2800517731646844 No Hit GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 1600 0.2648243717869355 No Hit CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 1342 0.2221214418362922 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 998 0.16518420190210104 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 687 0.11370896463601546 No Hit TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 609 0.10079877651140234 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.310304647336694E-4 0.0 0.0 0.23155581008120177 0.0 2 3.310304647336694E-4 0.0 0.0 0.9947465465246766 0.0 3 3.310304647336694E-4 0.0 0.0 1.4093622036035975 0.0 4 3.310304647336694E-4 0.0 0.0 1.929742094164926 0.0 5 3.310304647336694E-4 0.0 0.0 3.4384134371886246 0.0 6 3.310304647336694E-4 0.0 0.0 4.399725906775201 0.0 7 3.310304647336694E-4 0.0 0.0 5.335549030577284 0.0 8 3.310304647336694E-4 0.0 0.0 6.877157904841982 0.0 9 3.310304647336694E-4 0.0 0.0 7.464736979744246 0.0 10 3.310304647336694E-4 0.0 0.0 8.715204560275682 0.0 11 3.310304647336694E-4 0.0 0.0 10.394853138334321 0.0 12 3.310304647336694E-4 0.0 0.0 11.832683961905014 0.0 13 3.310304647336694E-4 0.0 0.0 12.409008001006333 0.0 14 3.310304647336694E-4 0.0 0.0 12.645032722361439 0.0 15 3.310304647336694E-4 0.0 0.0 13.041110673415274 0.0 16 3.310304647336694E-4 0.0 0.0 13.858921436539804 0.0 17 3.310304647336694E-4 0.0 0.0 14.887102060002581 0.0 18 3.310304647336694E-4 0.0 0.0 15.947558153776892 0.0 19 4.965456971005042E-4 0.0 0.0 16.66920456689629 0.0 20 4.965456971005042E-4 0.0 0.0 17.358906540168892 0.0 21 4.965456971005042E-4 0.0 0.0 18.19988943582478 0.0 22 4.965456971005042E-4 0.0 0.0 19.13322983114136 0.0 23 4.965456971005042E-4 0.0 0.0 20.04091536544108 0.0 24 4.965456971005042E-4 0.0 0.0 20.742865465908828 0.0 25 4.965456971005042E-4 0.0 0.0 21.35874764554582 0.0 26 4.965456971005042E-4 0.0 0.0 21.927457983958263 0.0 27 4.965456971005042E-4 0.0 0.0 22.494844200511775 0.0 28 0.0011586066265678431 0.0 0.0 23.109236743057462 0.0 29 0.0011586066265678431 0.0 0.0 23.705422610042802 0.0 30 0.0011586066265678431 0.0 0.0 24.390324641576765 0.0 31 0.0011586066265678431 0.0 0.0 25.01961355503547 0.0 32 0.0011586066265678431 0.0 0.0 25.648074892332343 0.0 33 0.0013241218589346777 0.0 0.0 26.244922820247147 0.0 34 0.0014896370913015124 0.0 0.0 26.822736496439767 0.0 35 0.0014896370913015124 0.0 0.0 27.42488091179031 0.0 36 0.0014896370913015124 0.0 0.0 28.035301088759198 0.0 37 0.0014896370913015124 0.0 0.0 28.622714648429096 0.0 38 0.0016551523236683471 0.0 0.0 29.235617553883483 0.0 39 0.0016551523236683471 0.0 0.0 29.852989370611777 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTCGCA 20 7.030627E-4 45.0 10 ACAGACG 20 7.030627E-4 45.0 1 TATCGCG 20 7.030627E-4 45.0 32 AATACGA 20 7.030627E-4 45.0 27 GCTACGA 90 0.0 42.5 10 TATTGCG 60 3.6379788E-12 41.249996 1 TGTAACG 60 3.6379788E-12 41.249996 1 CGTTTTT 715 0.0 39.65035 1 TATAGCG 35 6.24337E-6 38.571426 1 TGGGCGC 70 0.0 38.571426 6 TACGTAG 35 6.24337E-6 38.571426 1 TAGTACG 35 6.24337E-6 38.571426 1 TAATCGT 35 6.24337E-6 38.571426 21 CCATCGA 100 0.0 38.25 31 TAGGGTC 195 0.0 38.076927 5 TACGAGG 65 9.094947E-12 38.07692 2 CCGATAA 30 1.1392811E-4 37.499996 11 CGACCCG 60 1.546141E-10 37.499996 32 TACGGAG 30 1.1392811E-4 37.499996 19 ATCCGCT 30 1.1392811E-4 37.499996 1 >>END_MODULE