SRR2935909.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935909.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	639266
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	2719	0.425331552123842	TruSeq Adapter, Index 15 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	2226	0.34821185547174416	TruSeq Adapter, Index 15 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTC	2087	0.3264681681803819	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2080	0.32537316234556507	No Hit
CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT	1870	0.2925229873010609	TruSeq Adapter, Index 14 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGC	1512	0.23652126032043	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCG	1356	0.2121182731445126	No Hit
CGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	1291	0.2019503618212137	TruSeq Adapter, Index 14 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	1110	0.1736366395209506	TruSeq Adapter, Index 15 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	874	0.13671929994712687	TruSeq Adapter, Index 14 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCC	667	0.10433841311754419	No Hit
CGTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCT	646	0.10105339561309377	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACTAT	20	7.030936E-4	45.0	9
TTGCGAG	20	7.030936E-4	45.0	1
CGAATGC	20	7.030936E-4	45.0	45
ACGCTCG	20	7.030936E-4	45.0	1
ACCGTAT	20	7.030936E-4	45.0	45
CAGTACG	25	3.8888567E-5	45.0	1
TAGTACG	20	7.030936E-4	45.0	1
GCGTCGG	30	2.1639844E-6	44.999996	1
CGTTTTT	1735	0.0	42.276657	1
TACGGGT	145	0.0	41.89655	4
TCCGGGT	50	1.0804797E-9	40.5	4
GCGAGAC	45	1.925946E-8	40.0	21
ACACGAC	40	3.4550067E-7	39.375	26
TATTGCG	35	6.2439394E-6	38.571426	1
AGGGCGC	70	0.0	38.571426	6
ATTGACG	35	6.2439394E-6	38.571426	1
GCTACGG	100	0.0	38.25	2
CGAATAG	95	0.0	37.894737	26
CGTAAGG	90	0.0	37.5	2
GCTCGTA	90	0.0	37.5	32