##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935909.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 639266 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.956567375709017 33.0 31.0 34.0 30.0 34.0 2 32.088851902025134 33.0 31.0 34.0 30.0 34.0 3 32.14531196716234 33.0 31.0 34.0 30.0 34.0 4 35.73020307665354 37.0 35.0 37.0 33.0 37.0 5 35.782154846339395 37.0 35.0 37.0 35.0 37.0 6 35.81355648509384 37.0 35.0 37.0 35.0 37.0 7 36.02676507119102 37.0 35.0 37.0 35.0 37.0 8 35.76442357328561 37.0 35.0 37.0 35.0 37.0 9 37.54666132720964 39.0 37.0 39.0 35.0 39.0 10 37.0302143395707 39.0 37.0 39.0 33.0 39.0 11 37.077634349394465 39.0 37.0 39.0 34.0 39.0 12 37.05130884483142 39.0 37.0 39.0 34.0 39.0 13 37.033560364543085 39.0 37.0 39.0 33.0 39.0 14 38.05850772604831 40.0 37.0 41.0 33.0 41.0 15 38.2369889842413 40.0 38.0 41.0 33.0 41.0 16 38.38297359784503 40.0 38.0 41.0 34.0 41.0 17 38.39542068559879 40.0 38.0 41.0 34.0 41.0 18 38.39200426739417 40.0 38.0 41.0 34.0 41.0 19 38.34303873504926 40.0 37.0 41.0 34.0 41.0 20 38.175161826219444 40.0 37.0 41.0 34.0 41.0 21 38.17772570416697 40.0 37.0 41.0 34.0 41.0 22 38.21096695272391 40.0 37.0 41.0 34.0 41.0 23 38.23356787315453 40.0 37.0 41.0 34.0 41.0 24 38.13518629177838 40.0 37.0 41.0 34.0 41.0 25 38.067771475410865 40.0 37.0 41.0 34.0 41.0 26 37.896906764946046 40.0 36.0 41.0 34.0 41.0 27 37.85268417215995 40.0 36.0 41.0 33.0 41.0 28 37.851975546955416 40.0 36.0 41.0 33.0 41.0 29 37.79539815976448 40.0 36.0 41.0 33.0 41.0 30 37.685206158312816 40.0 36.0 41.0 33.0 41.0 31 37.69746083789846 40.0 36.0 41.0 33.0 41.0 32 37.58086774519527 40.0 36.0 41.0 33.0 41.0 33 37.546972621725544 40.0 36.0 41.0 33.0 41.0 34 37.41129357732149 40.0 36.0 41.0 33.0 41.0 35 37.32888187389913 40.0 36.0 41.0 32.0 41.0 36 37.24537516464195 40.0 36.0 41.0 32.0 41.0 37 37.25625482975788 40.0 36.0 41.0 32.0 41.0 38 37.223949029042686 40.0 36.0 41.0 32.0 41.0 39 37.190570122609365 40.0 36.0 41.0 32.0 41.0 40 37.078823212872265 40.0 35.0 41.0 32.0 41.0 41 36.94254191525906 39.0 35.0 41.0 31.0 41.0 42 36.94516836496857 39.0 35.0 41.0 31.0 41.0 43 36.933032571730706 39.0 35.0 41.0 31.0 41.0 44 36.90477359972218 39.0 35.0 41.0 31.0 41.0 45 36.81296518194304 39.0 35.0 41.0 31.0 41.0 46 36.751067630688944 39.0 35.0 41.0 31.0 41.0 47 36.697575031364096 39.0 35.0 41.0 31.0 41.0 48 36.64889263624219 39.0 35.0 41.0 31.0 41.0 49 36.648853528890946 39.0 35.0 41.0 31.0 41.0 50 36.536723367111655 39.0 35.0 41.0 31.0 41.0 51 35.53364952930392 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 4.0 9 5.0 10 15.0 11 12.0 12 4.0 13 13.0 14 12.0 15 15.0 16 33.0 17 56.0 18 102.0 19 182.0 20 384.0 21 603.0 22 976.0 23 1467.0 24 2279.0 25 3679.0 26 5116.0 27 5964.0 28 6460.0 29 7344.0 30 8926.0 31 11262.0 32 15475.0 33 21773.0 34 38122.0 35 43616.0 36 43990.0 37 67808.0 38 132289.0 39 221109.0 40 168.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.06532491951707 22.609367618487454 26.225546173267468 11.099761288728011 2 32.34819308394315 24.929684982464266 25.651919545228434 17.070202388364155 3 30.227166781902998 24.42551301023361 28.696192195424125 16.65112801243927 4 27.055091307843682 25.799432474118756 29.42296321093254 17.72251300710502 5 24.80939077003939 28.88296890496288 27.169597632284525 19.138042692713206 6 23.703434876874415 34.060156491976734 26.896315461795243 15.340093169353603 7 78.28540857796285 5.267916641898678 10.921118908247896 5.525555871890575 8 79.15937966355163 4.795969127092635 9.954854473724554 6.089796735631177 9 74.17444381525061 5.706231834635347 12.509346656947187 7.609977693166852 10 38.03455838414681 22.23831706988953 21.599615809381383 18.127508736582268 11 28.601395976009986 24.845838821398292 25.452002765671878 21.100762436919844 12 25.98401917198787 21.495120966858867 30.344332406228393 22.176527454924866 13 24.348862601796437 22.82211160925186 32.90711534791464 19.921910441037063 14 20.486620592992587 26.12120776014992 31.458109769642057 21.934061877215434 15 19.98870579696089 24.941573617242273 35.06443327190872 20.005287313888115 16 22.480313359384045 25.148842578832596 30.601502348005365 21.76934171377799 17 22.327012542509692 25.255996721239672 28.784731238639317 23.632259497611326 18 23.424364818401102 25.127411750351186 30.548472779719237 20.89975065152847 19 21.905122437295272 28.151505007305254 28.43417294209296 21.509199613306514 20 21.72616719800521 28.70041578935842 29.234152919129127 20.339264093507243 21 20.722203276883175 28.74202601108146 31.03919182312214 19.49657888891322 22 19.43150425644411 25.158854060750922 30.376556863653004 25.033084819151963 23 19.404754828193585 27.380777328999194 30.11610190437158 23.098365938435645 24 20.63053564556851 26.37853413133187 29.488507131616572 23.502423091483042 25 20.252915061961687 28.03981441215394 27.04726983759499 24.660000688289383 26 18.89917499131817 27.849596255705762 29.004045264412625 24.247183488563444 27 20.632569227833173 26.851263793162783 28.752506781214706 23.763660197789342 28 17.55575926140292 26.463631727637633 29.56875541636815 26.411853594591296 29 19.192010837429176 26.506493384600464 28.958524307565238 25.342971470405125 30 21.326959356512 25.841981272271635 27.297400456148146 25.53365891506822 31 20.28983240153551 26.619904703206487 26.402311400887896 26.687951494370104 32 20.490531328116933 27.137216745454946 27.73211777257042 24.64013415385771 33 20.38337718570986 24.06071963783464 27.285042533155213 28.27086064330028 34 19.231900335697503 24.52140423548257 29.32409982698908 26.92259560183085 35 18.14612383577415 25.65207597463341 29.817791029086482 26.384009160505954 36 19.90204390660539 25.391933874161932 28.315286594312855 26.39073562491983 37 19.39317905222552 24.757612636993052 30.90904255818392 24.94016575259751 38 18.892135668094344 24.08027331345637 30.42786570848442 26.599725309964867 39 20.939796579201772 22.053886801425385 30.890114600182084 26.11620201919076 40 22.299324537829325 22.66192789855866 31.138211636470576 23.90053592714144 41 19.769391771187582 24.350896184061092 29.988611939317906 25.891100105433416 42 19.75062024259072 23.26809184283225 32.90883607136935 24.07245184320768 43 19.71182575015721 22.92754502820422 31.700888206161444 25.659741015477127 44 19.81381772220015 22.977133149580926 28.910500480238273 28.298548647980653 45 20.918991468340252 21.962375599515692 28.049356605857344 29.069276326286708 46 22.321224654525658 22.90220346459846 28.615161763647684 26.161410117228197 47 18.631993567622867 23.110411002618626 32.75835098378453 25.49924444597398 48 18.92623727837864 22.718868201969133 31.49002136825672 26.864873151395507 49 20.586578982770863 20.750673428588414 32.55202059862405 26.110726990016676 50 19.462320849223953 20.32330829419991 31.441997540929755 28.772373315646384 51 19.187943672899856 21.010971958464864 28.669129908363654 31.131954460271622 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 119.0 1 230.5 2 342.0 3 1997.5 4 3653.0 5 2537.5 6 1422.0 7 1431.0 8 1440.0 9 1496.0 10 1552.0 11 1503.0 12 1454.0 13 1463.0 14 1472.0 15 1461.5 16 1451.0 17 1373.5 18 1296.0 19 1469.5 20 1643.0 21 1574.5 22 1506.0 23 1646.5 24 1787.0 25 2246.5 26 3094.0 27 3482.0 28 4087.0 29 4692.0 30 5389.5 31 6087.0 32 7456.5 33 8826.0 34 10825.5 35 12825.0 36 14165.0 37 15505.0 38 17817.5 39 20130.0 40 22498.5 41 24867.0 42 29423.0 43 33979.0 44 39899.0 45 45819.0 46 59023.5 47 72228.0 48 80078.0 49 87928.0 50 86361.5 51 84795.0 52 72158.5 53 59522.0 54 50359.5 55 41197.0 56 35413.5 57 29630.0 58 25774.0 59 21918.0 60 19300.5 61 16683.0 62 13616.0 63 10549.0 64 8728.5 65 6908.0 66 5569.0 67 4230.0 68 3381.5 69 2533.0 70 1855.0 71 1177.0 72 1033.5 73 890.0 74 677.5 75 384.0 76 303.0 77 238.5 78 174.0 79 102.5 80 31.0 81 33.0 82 35.0 83 19.5 84 4.0 85 5.5 86 7.0 87 5.5 88 4.0 89 2.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 639266.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.48578948859169 #Duplication Level Percentage of deduplicated Percentage of total 1 72.70774600967121 29.436304991375405 2 11.814603823630838 9.56647126589257 3 4.338312562529765 5.269200274268785 4 2.245506315877622 3.6364438399969794 5 1.390879182404927 2.815542089145519 6 0.9912132316498642 2.4078030140929845 7 0.7812562753739671 2.2140843971002155 8 0.5936101911275785 1.9226221789019056 9 0.4974388564847585 1.8125284344378934 >10 4.528883452841374 33.039381148952444 >50 0.06875200480727248 1.8959288938947525 >100 0.03593854776894561 2.8114721221801933 >500 0.002343818332757322 0.6020855245058219 >1k 0.003515727499135983 2.57013182525456 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC 2719 0.425331552123842 TruSeq Adapter, Index 15 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC 2226 0.34821185547174416 TruSeq Adapter, Index 15 (95% over 21bp) GAATCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTC 2087 0.3264681681803819 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2080 0.32537316234556507 No Hit CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT 1870 0.2925229873010609 TruSeq Adapter, Index 14 (95% over 23bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGC 1512 0.23652126032043 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCG 1356 0.2121182731445126 No Hit CGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG 1291 0.2019503618212137 TruSeq Adapter, Index 14 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC 1110 0.1736366395209506 TruSeq Adapter, Index 15 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC 874 0.13671929994712687 TruSeq Adapter, Index 14 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCC 667 0.10433841311754419 No Hit CGTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCT 646 0.10105339561309377 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.128588099476587E-4 0.0 0.0 0.3039423338641504 0.0 2 3.128588099476587E-4 0.0 0.0 1.4414969668338375 0.0 3 3.128588099476587E-4 0.0 0.0 2.138702824802195 0.0 4 3.128588099476587E-4 0.0 0.0 3.0503733969896727 0.0 5 3.128588099476587E-4 0.0 0.0 5.460324810016488 0.0 6 3.128588099476587E-4 0.0 0.0 7.086877762934366 0.0 7 3.128588099476587E-4 0.0 0.0 8.59689080914674 0.0 8 3.128588099476587E-4 0.0 0.0 10.844312070405747 0.0 9 3.128588099476587E-4 0.0 0.0 11.768653424396105 0.0 10 3.128588099476587E-4 0.0 0.0 13.849320939953008 0.0 11 3.128588099476587E-4 0.0 0.0 16.444328339063865 0.0 12 3.128588099476587E-4 0.0 0.0 18.60759058044695 0.0 13 3.128588099476587E-4 0.0 0.0 19.480466660200918 0.0 14 3.128588099476587E-4 0.0 0.0 19.879518072289155 0.0 15 3.128588099476587E-4 0.0 0.0 20.433903883516408 0.0 16 3.128588099476587E-4 0.0 0.0 21.567704210766724 0.0 17 3.128588099476587E-4 0.0 0.0 22.996061107582758 0.0 18 3.128588099476587E-4 0.0 0.0 24.43646306858178 0.0 19 4.692882149214881E-4 0.0 0.0 25.39287245059177 0.0 20 4.692882149214881E-4 0.0 0.0 26.282642906082913 0.0 21 4.692882149214881E-4 0.0 0.0 27.43411975609527 0.0 22 4.692882149214881E-4 0.0 0.0 28.633933292244542 0.0 23 4.692882149214881E-4 0.0 0.0 29.822796770045645 0.0 24 4.692882149214881E-4 0.0 0.0 30.74948456511061 0.0 25 4.692882149214881E-4 0.0 0.0 31.57339824110777 0.0 26 4.692882149214881E-4 0.0 0.0 32.36336673622561 0.0 27 4.692882149214881E-4 0.0 0.0 33.18415182412329 0.0 28 4.692882149214881E-4 0.0 0.0 33.95425378480945 0.0 29 4.692882149214881E-4 0.0 0.0 34.780670331286196 0.0 30 4.692882149214881E-4 0.0 0.0 35.66449646938833 0.0 31 4.692882149214881E-4 0.0 0.0 36.47292363429308 0.0 32 4.692882149214881E-4 0.0 0.0 37.251785641657776 0.0 33 4.692882149214881E-4 0.0 0.0 37.964165151908595 0.0 34 4.692882149214881E-4 0.0 0.0 38.68045539728376 0.0 35 6.257176198953174E-4 0.0 0.0 39.41770718292542 0.0 36 6.257176198953174E-4 0.0 0.0 40.12351665816733 0.0 37 6.257176198953174E-4 0.0 0.0 40.85247768534538 0.0 38 6.257176198953174E-4 0.0 0.0 41.61256816411322 0.0 39 6.257176198953174E-4 0.0 0.0 42.62748214358342 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACTAT 20 7.030936E-4 45.0 9 TTGCGAG 20 7.030936E-4 45.0 1 CGAATGC 20 7.030936E-4 45.0 45 ACGCTCG 20 7.030936E-4 45.0 1 ACCGTAT 20 7.030936E-4 45.0 45 CAGTACG 25 3.8888567E-5 45.0 1 TAGTACG 20 7.030936E-4 45.0 1 GCGTCGG 30 2.1639844E-6 44.999996 1 CGTTTTT 1735 0.0 42.276657 1 TACGGGT 145 0.0 41.89655 4 TCCGGGT 50 1.0804797E-9 40.5 4 GCGAGAC 45 1.925946E-8 40.0 21 ACACGAC 40 3.4550067E-7 39.375 26 TATTGCG 35 6.2439394E-6 38.571426 1 AGGGCGC 70 0.0 38.571426 6 ATTGACG 35 6.2439394E-6 38.571426 1 GCTACGG 100 0.0 38.25 2 CGAATAG 95 0.0 37.894737 26 CGTAAGG 90 0.0 37.5 2 GCTCGTA 90 0.0 37.5 32 >>END_MODULE