SRR2935907.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935907.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	495578
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	1199	0.24193971483802754	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	920	0.1856418162226733	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	833	0.16808655751465965	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	775	0.1563830517093172	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	718	0.14488133048682547	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	513	0.10351549100242545	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGATT	20	7.029397E-4	45.000004	17
CGGTTCA	20	7.029397E-4	45.000004	41
CGCATCG	20	7.029397E-4	45.000004	21
CGACTAT	20	7.029397E-4	45.000004	12
TCGACGT	20	7.029397E-4	45.000004	26
CCCGCTT	20	7.029397E-4	45.000004	19
CGACCAG	25	3.8875834E-5	45.0	11
GTTACCG	25	3.8875834E-5	45.0	38
ACTACGG	45	3.8380676E-10	45.0	2
TCCGTTT	25	3.8875834E-5	45.0	23
TAGTGCG	25	3.8875834E-5	45.0	1
TATTGCG	60	3.6379788E-12	41.250004	1
CGGGAAC	55	6.002665E-11	40.909092	6
GCGTAAG	55	6.002665E-11	40.909092	1
AATACGG	50	1.0786607E-9	40.5	2
TACGAAT	135	0.0	40.000004	12
TTGTGCG	45	1.9244908E-8	40.0	1
TACTCAC	80	0.0	39.375004	30
CTGACTA	140	0.0	38.57143	22
TAGCCGT	35	6.2410963E-6	38.57143	44