SRR2935906.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935906.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	249018
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1597	0.6413191014304187	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1536	0.6168228802737151	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	934	0.3750732878747721	No Hit
TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	620	0.24897798552715064	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	609	0.24456063417102378	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGC	550	0.22086756780634334	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	530	0.21283601988611264	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCG	513	0.20600920415391658	No Hit
ACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	445	0.17870194122513233	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	388	0.15581202965247493	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCC	335	0.13452842766386366	No Hit
GCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	331	0.13292211807981752	No Hit
GGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	257	0.10320539077496406	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCAT	20	7.0226315E-4	45.000004	18
CGCATGA	20	7.0226315E-4	45.000004	20
CGCGCCT	40	6.7775545E-9	45.000004	17
TAGCCGT	30	2.158631E-6	45.000004	44
CGTTAGG	20	7.0226315E-4	45.000004	2
ACGATGC	20	7.0226315E-4	45.000004	43
GTTAAAC	20	7.0226315E-4	45.000004	27
TAATTCG	20	7.0226315E-4	45.000004	4
AATTCGG	20	7.0226315E-4	45.000004	5
TACTCCG	20	7.0226315E-4	45.000004	34
TGCTCAA	20	7.0226315E-4	45.000004	33
TTTGCGC	40	6.7775545E-9	45.000004	13
CCGAATT	20	7.0226315E-4	45.000004	20
CGATGCC	20	7.0226315E-4	45.000004	44
CAGTCCG	20	7.0226315E-4	45.000004	15
GCGTGGA	20	7.0226315E-4	45.000004	3
CGCACGA	20	7.0226315E-4	45.000004	40
ACTCCGC	20	7.0226315E-4	45.000004	35
ATGCACG	20	7.0226315E-4	45.000004	1
CGCCATA	20	7.0226315E-4	45.000004	39