SRR2935905.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935905.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	933166
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC	7477	0.801250795678368	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5887	0.6308631047423502	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC	4294	0.4601539275970192	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG	3874	0.41514585829316547	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	2987	0.32009310240621713	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCT	2199	0.23564939142660576	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	1640	0.17574579442457183	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG	1533	0.16427945295906624	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT	1452	0.15559932530760873	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTT	1109	0.11884273537612815	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTT	1036	0.11101990428283928	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCT	1029	0.11026976979444172	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTC	995	0.10662625942222499	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	45	3.8380676E-10	45.0	1
GATCGAC	20	7.032605E-4	45.0	9
ATAGCGA	25	3.89024E-5	45.0	10
CTACGCG	25	3.89024E-5	45.0	1
CGTCGAA	25	3.89024E-5	45.0	42
CGATCCC	20	7.032605E-4	45.0	34
TATCGCG	35	1.2115925E-7	45.0	1
CGGACTA	20	7.032605E-4	45.0	27
CGTTTTT	3725	0.0	42.52349	1
ACGACGC	70	0.0	41.785713	14
TTAGGCG	50	1.0804797E-9	40.5	1
ATTAGCG	50	1.0804797E-9	40.5	1
GCGAATG	50	1.0804797E-9	40.5	1
GTTAGCG	95	0.0	40.263157	1
TTGCGCG	45	1.927583E-8	40.0	1
ATAACGG	80	0.0	39.375	2
GCGAGAC	260	0.0	38.94231	21
CGAGACA	260	0.0	38.94231	22
CTAAGCG	35	6.2470262E-6	38.571426	1
GCGTTAG	70	0.0	38.571426	1