SRR2935904.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935904.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	526126
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGC	17438	3.314415178113227	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCG	14841	2.8208071830702153	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTC	14154	2.6902300969729684	No Hit
GCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC	4930	0.937037895865249	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCT	3173	0.6030874733428875	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACGTGAAT	2897	0.5506285566575307	No Hit
GAACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCT	2586	0.49151724111714684	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACGTGAATCGTA	2462	0.46794874231647937	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTT	2442	0.4641473715421781	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTC	2427	0.46129634346145215	No Hit
CCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC	1379	0.26210451488806863	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1120	0.21287676336086792	No Hit
CTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGCT	1027	0.19520038926036729	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGC	868	0.16497949160467265	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATG	771	0.14654284334931178	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCG	758	0.14407195234601597	No Hit
GAATATGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTC	678	0.12886646924881112	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCACGTGAATCGT	643	0.12221407039378399	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCACGTGAATCGTAT	632	0.12012331646791834	No Hit
TCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC	565	0.10738872437400927	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCACGTGAA	530	0.10073632551898214	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGA	25	3.887911E-5	45.000004	9
TAAAGCG	20	7.0297945E-4	45.000004	1
CTGAGCG	20	7.0297945E-4	45.000004	1
ATTACGG	25	3.887911E-5	45.000004	2
TTCACGG	25	3.887911E-5	45.000004	2
TTTCACG	20	7.0297945E-4	45.000004	1
TATTGCG	20	7.0297945E-4	45.000004	1
ATCCGGC	40	6.8030204E-9	45.000004	6
ACGGCCG	20	7.0297945E-4	45.000004	30
TACGATG	20	7.0297945E-4	45.000004	1
CGTAAGG	20	7.0297945E-4	45.000004	2
GTAAGCG	25	3.887911E-5	45.000004	1
CGATCTA	20	7.0297945E-4	45.000004	43
AATCGTG	20	7.0297945E-4	45.000004	27
TGCGTTC	20	7.0297945E-4	45.000004	14
TCACGTT	20	7.0297945E-4	45.000004	44
GCGAGCC	20	7.0297945E-4	45.000004	33
CTACGAA	35	1.2102464E-7	45.0	11
TAATCCG	35	1.2102464E-7	45.0	4
CGCGCGG	30	2.1632495E-6	44.999996	2

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content