SRR2935903.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935903.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	353924
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGC	5003	1.4135803166781569	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC	4254	1.2019529616527842	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCG	4114	1.1623964466947707	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	2845	0.8038448932539188	TruSeq Adapter, Index 23 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	1632	0.4611159457962727	TruSeq Adapter, Index 23 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT	1057	0.29865168793300256	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	967	0.2732224997457081	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCT	961	0.2715272205332218	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCGATACT	793	0.22405940258360554	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCT	766	0.2164306461274172	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCGATACTCGTA	720	0.2034335054983556	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTC	705	0.19919530746713981	No Hit
TCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	694	0.19608729557758164	TruSeq Adapter, Index 23 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTT	493	0.1392954419592907	No Hit
ACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	413	0.11669171912614007	TruSeq Adapter, Index 20 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG	373	0.10538985770956477	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTCGC	30	2.1612286E-6	45.000004	38
ATCGTGA	30	2.1612286E-6	45.000004	30
GTTGTCG	30	2.1612286E-6	45.000004	37
CTACGAA	30	2.1612286E-6	45.000004	11
TTGACGG	65	0.0	45.000004	2
CGAATGG	30	2.1612286E-6	45.000004	2
TTCGGGC	30	2.1612286E-6	45.000004	4
GAACCGC	30	2.1612286E-6	45.000004	9
GCTACGA	30	2.1612286E-6	45.000004	10
CTAGGCG	30	2.1612286E-6	45.000004	1
CTTCGTA	20	7.0266635E-4	45.0	19
CTCACGA	20	7.0266635E-4	45.0	24
GCGCGCC	20	7.0266635E-4	45.0	16
GACGTTG	20	7.0266635E-4	45.0	1
TGGCGTG	20	7.0266635E-4	45.0	1
TAGCGGT	20	7.0266635E-4	45.0	40
CGCGCCT	20	7.0266635E-4	45.0	17
CCTCGAT	40	6.7921064E-9	45.0	15
TCAGGTC	20	7.0266635E-4	45.0	19
CTGCGGT	20	7.0266635E-4	45.0	15