Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935900.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 931615 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5375 | 0.5769550726426689 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC | 2513 | 0.26974662280019107 | No Hit |
GCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC | 1616 | 0.17346221346800986 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGC | 1300 | 0.13954262222055247 | No Hit |
CCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC | 1284 | 0.13782517456245338 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCG | 1267 | 0.13600038642572307 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTG | 1253 | 0.13449761972488636 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTCGCG | 20 | 7.032599E-4 | 45.0 | 1 |
TAGCGCG | 20 | 7.032599E-4 | 45.0 | 1 |
ATAGCGT | 20 | 7.032599E-4 | 45.0 | 14 |
ACTTCGA | 25 | 3.890234E-5 | 45.0 | 19 |
CTTACGG | 40 | 6.8121153E-9 | 45.0 | 2 |
CGTTTTT | 3510 | 0.0 | 42.948715 | 1 |
CGCGAGG | 105 | 0.0 | 42.857143 | 2 |
GACACGA | 180 | 0.0 | 41.250004 | 25 |
CGGTCTA | 60 | 3.6379788E-12 | 41.249996 | 31 |
TACGGGA | 375 | 0.0 | 39.600002 | 4 |
CGTTATT | 250 | 0.0 | 39.6 | 1 |
ACAACGA | 305 | 0.0 | 39.098362 | 13 |
ACACGAC | 190 | 0.0 | 39.07895 | 26 |
TGCACGG | 110 | 0.0 | 38.863636 | 2 |
ACGAAGG | 135 | 0.0 | 38.333336 | 2 |
CGACGGT | 65 | 9.094947E-12 | 38.07692 | 28 |
ACGGTCT | 65 | 9.094947E-12 | 38.07692 | 30 |
ATCGTTC | 30 | 1.1397559E-4 | 37.499996 | 11 |
TCGACGG | 60 | 1.546141E-10 | 37.499996 | 2 |
AAGGGCG | 360 | 0.0 | 36.875004 | 5 |