SRR2935898.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935898.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1059517
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17114	1.6152643138335674	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTC	8480	0.8003646944787106	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTT	4325	0.40820487070995554	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGC	3872	0.36544953974310934	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCG	3813	0.3598809646282221	No Hit
CGCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTG	3793	0.3579933120469044	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTC	3476	0.32807401863301866	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCT	3020	0.2850355397789747	No Hit
GAACTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCT	2809	0.2651208050460729	No Hit
GCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC	2417	0.22812281445224572	TruSeq Adapter, Index 15 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCT	2223	0.20981258441346387	No Hit
CCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC	1815	0.17130447175458252	TruSeq Adapter, Index 15 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTT	1721	0.16243250462238926	No Hit
CTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGCT	1472	0.13893122998498372	TruSeq Adapter, Index 14 (95% over 23bp)
CGTTTTTCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTC	1433	0.13525030745141417	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCC	1156	0.10910631920016385	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCGG	45	3.8562575E-10	45.000004	2
GTCGACG	20	7.0330384E-4	45.0	1
GCCGCGA	20	7.0330384E-4	45.0	19
TATTGCG	25	3.8905982E-5	45.0	1
TGCGACG	20	7.0330384E-4	45.0	1
GCCTACG	20	7.0330384E-4	45.0	1
AAATGCG	20	7.0330384E-4	45.0	1
CGTTATT	830	0.0	44.728916	1
CGTTTTT	11680	0.0	44.32577	1
CGTTCTG	455	0.0	42.52747	1
TAATACG	50	1.0822987E-9	40.5	4
CGTTTCT	500	0.0	40.499996	1
TAGCGCG	45	1.9281288E-8	40.000004	1
ATGCGCG	40	3.4578807E-7	39.375	1
GTTAGCG	70	0.0	38.57143	1
GTTTTTT	13675	0.0	37.842777	2
TACGGGA	365	0.0	37.60274	4
CTCGCGG	30	1.1398618E-4	37.499996	2
TATCGCG	30	1.1398618E-4	37.499996	1
ATGACGG	115	0.0	37.173912	2