SRR2935895.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935895.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	350885
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGC	6050	1.7242116362910926	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCG	4882	1.3913390427062997	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTC	4852	1.3827892329395672	No Hit
GCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	2908	0.8287615600552887	No Hit
CCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	1799	0.5127035923450703	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCT	1127	0.32118785357025803	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1007	0.2869886145033273	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGATCTGT	940	0.2678940393576243	No Hit
CTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGCT	935	0.26646907106316886	TruSeq Adapter, Index 13 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCT	915	0.2607691978853471	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTC	841	0.23967966712740643	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGATCTGTCGTA	830	0.23654473687960442	No Hit
TCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	615	0.17527110021802014	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	387	0.11029254599085171	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	369	0.10516266013081209	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	30	2.1611759E-6	45.000004	4
GCCCTCG	70	0.0	45.000004	13
AGTTATG	30	2.1611759E-6	45.000004	1
GCTACGA	60	0.0	45.000004	10
TGATATG	25	3.8852482E-5	45.0	1
CCTTATC	20	7.02658E-4	45.0	43
CGGCGAA	20	7.02658E-4	45.0	31
TCGTTGA	25	3.8852482E-5	45.0	40
ATAGGCG	20	7.02658E-4	45.0	12
CATGCGG	20	7.02658E-4	45.0	2
CGTGAGT	20	7.02658E-4	45.0	32
CGCATGG	20	7.02658E-4	45.0	2
GGACTAG	20	7.02658E-4	45.0	1
TGAACTA	20	7.02658E-4	45.0	29
TAAGTCC	25	3.8852482E-5	45.0	23
CGCGAGG	40	6.7921064E-9	45.0	2
ACGGGCC	25	3.8852482E-5	45.0	5
ATCGTGA	20	7.02658E-4	45.0	30
GTAATCG	20	7.02658E-4	45.0	15
TGTTGCG	20	7.02658E-4	45.0	1