SRR2935894.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935894.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	850533
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTC	6212	0.7303655472509591	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3934	0.4625334937033601	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGC	3426	0.402806240322245	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCG	3133	0.36835725362801913	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	2079	0.24443496019554795	TruSeq Adapter, Index 15 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCT	1921	0.22585837351402002	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTT	1176	0.13826624011061298	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	1163	0.1367377867760569	TruSeq Adapter, Index 15 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTG	1009	0.11863149342823853	No Hit
CTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGCT	854	0.10040762674699277	TruSeq Adapter, Index 14 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACG	20	7.03225E-4	45.0	1
TATTGCG	55	1.8189894E-12	45.0	1
TTACGCG	20	7.03225E-4	45.0	1
AGTACGG	60	0.0	44.999996	2
CGCACGG	95	0.0	42.63158	2
CGTTTTT	2685	0.0	42.486034	1
TTGTACG	55	6.002665E-11	40.909092	1
GCACGCG	50	1.0804797E-9	40.500004	1
TACGCGG	95	0.0	40.263157	2
TCGCGCG	45	1.9272193E-8	40.000004	1
GACGGGT	85	0.0	39.705883	4
TTTCGCG	40	3.4568075E-7	39.375	1
AGGCGAT	40	3.4568075E-7	39.375	6
CTTACGG	80	0.0	39.375	2
CGAAAGG	180	0.0	38.750004	2
ACGGGAA	630	0.0	38.57143	5
TGATCGA	35	6.2463732E-6	38.571426	21
CGGCGAA	35	6.2463732E-6	38.571426	31
CGACAGG	70	0.0	38.571426	2
AATAGCG	35	6.2463732E-6	38.571426	1