SRR2935893.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935893.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339989
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGC	2671	0.7856136522063949	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCG	2298	0.675904220430661	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTC	2263	0.6656097697278441	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	2239	0.6585507178173412	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1464	0.4306021665406822	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1022	0.3005979605222522	No Hit
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT	896	0.2635379379921115	No Hit
TCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	646	0.1900061472577054	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCT	516	0.15176961607581424	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGATTACGT	445	0.13088658750724289	No Hit
GAACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	387	0.11382721205686067	No Hit
ACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	386	0.11353308489392305	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGATTACGTCGTA	386	0.11353308489392305	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTC	376	0.1105918132645468	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCC	60	0.0	45.000004	6
ATCTACC	25	3.8849903E-5	45.000004	15
GGGTCGT	25	3.8849903E-5	45.000004	7
GTTAGCG	30	2.1609758E-6	45.000004	1
ATGTCCG	25	3.8849903E-5	45.000004	11
GTTACGG	30	2.1609758E-6	45.000004	2
CGGATGG	30	2.1609758E-6	45.000004	2
TACGAAT	50	2.1827873E-11	45.000004	12
ATGCAGC	30	2.1609758E-6	45.000004	42
GTACGAG	25	3.8849903E-5	45.000004	1
GCATATC	50	2.1827873E-11	45.000004	28
TCACGAC	20	7.0262706E-4	45.0	25
CGACGGT	20	7.0262706E-4	45.0	28
TTCCGTA	20	7.0262706E-4	45.0	18
ATATGCG	20	7.0262706E-4	45.0	1
TCCTAAG	20	7.0262706E-4	45.0	20
AATGCGG	40	6.7902874E-9	45.0	2
CCGTACA	20	7.0262706E-4	45.0	20
TACGAAA	20	7.0262706E-4	45.0	20
CGAGGGT	45	3.8380676E-10	45.0	4