SRR2935892.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935892.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1174040
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16507	1.4059997955776635	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTT	3496	0.2977752035705768	No Hit
CGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTG	3065	0.26106435896562297	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	2685	0.22869748901229942	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCT	2379	0.2026336411025178	No Hit
CCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	1903	0.16208987768730196	No Hit
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	1765	0.15033559333583182	No Hit
CGTCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT	1743	0.14846172191748153	No Hit
GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	1560	0.13287451875574938	No Hit
CTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGCT	1407	0.11984259480085858	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACT	20	7.0333487E-4	45.0	26
CTACGCG	20	7.0333487E-4	45.0	1
CGTTTTT	8275	0.0	42.770393	1
TGCGAAG	70	0.0	41.785713	1
CGTTATT	655	0.0	39.50382	1
GCTAACG	40	3.458299E-7	39.375	1
TACGCGG	110	0.0	38.863636	2
TCGATAG	35	6.248403E-6	38.571426	1
CTAACGG	65	9.094947E-12	38.076927	2
TACGTAG	60	1.5643309E-10	37.500004	1
ACGGGAC	270	0.0	37.5	5
TGCGTAG	55	2.750312E-9	36.81818	1
CACAACG	445	0.0	36.40449	12
TACGGGA	415	0.0	36.325302	4
GCGTTAG	100	0.0	36.000004	1
ACGATAG	25	0.0021071266	36.000004	1
TGCGATC	25	0.0021071266	36.000004	19
TACGAAT	100	0.0	36.000004	12
CGAATTC	25	0.0021071266	36.000004	13
CATACCG	25	0.0021071266	36.000004	2