SRR2935891.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935891.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	310304
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	1393	0.4489146127668351	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	1094	0.3525574920078375	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGC	1004	0.3235536763947613	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC	955	0.3077627101165309	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCG	876	0.28230380530060845	No Hit
CTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGCT	678	0.21849541095184077	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	590	0.1901361245746107	No Hit
TCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	428	0.1379292564710735	TruSeq Adapter, Index 16 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	349	0.11247035165515108	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACCG	20	7.0253183E-4	45.0	14
CACGGGC	45	3.8198777E-10	45.0	4
TTTCGCG	20	7.0253183E-4	45.0	1
GGCGTAG	40	6.7866495E-9	45.0	1
TTGTCGA	20	7.0253183E-4	45.0	22
CGATTCT	20	7.0253183E-4	45.0	10
CACTAGA	20	7.0253183E-4	45.0	20
CGAATTG	20	7.0253183E-4	45.0	32
ACGTAAG	20	7.0253183E-4	45.0	1
CAATCAC	20	7.0253183E-4	45.0	42
GTAACCG	20	7.0253183E-4	45.0	18
TAATCCG	20	7.0253183E-4	45.0	40
ATTAGCG	25	3.8842038E-5	44.999996	28
TACGGTT	50	2.1827873E-11	44.999996	33
TTGACGG	25	3.8842038E-5	44.999996	2
GTCGTTG	25	3.8842038E-5	44.999996	1
TCGTACG	50	2.1827873E-11	44.999996	30
TAGTACG	25	3.8842038E-5	44.999996	1
GTAGGGC	110	0.0	42.954548	4
TAGGGCA	85	0.0	42.35294	5