SRR2935885.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935885.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	503137
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	2337	0.4644858159904758	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	2068	0.41102125266080614	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC	1359	0.27010535897777344	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG	1269	0.2522175868600401	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTC	1233	0.24506247801294678	No Hit
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGCT	1208	0.24009365242468753	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	823	0.16357373836549488	No Hit
TCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	683	0.13574831507124302	No Hit
AAGACCGGGATTTGCTACTGGTGACAACAGCACCTTTCTGAGCACAAGCCA	593	0.11786054295350969	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTGC	30	2.1630585E-6	45.000004	10
TTTACGG	25	3.887667E-5	45.000004	2
ATTACGG	25	3.887667E-5	45.000004	2
ATTCGCG	25	3.887667E-5	45.000004	1
TATTGCG	25	3.887667E-5	45.000004	1
CCGTAAG	25	3.887667E-5	45.000004	25
AGTACGG	30	2.1630585E-6	45.000004	2
TCGCCAC	20	7.029502E-4	45.0	16
GGTACGA	20	7.029502E-4	45.0	8
CGTATGT	35	1.2101009E-7	45.0	35
ACGTTAG	20	7.029502E-4	45.0	1
TTTAACG	20	7.029502E-4	45.0	1
ACCGCAC	20	7.029502E-4	45.0	18
GCACGGC	20	7.029502E-4	45.0	32
CTTGCGT	20	7.029502E-4	45.0	18
GAACGTG	35	1.2101009E-7	45.0	9
TTAACGG	40	6.8012014E-9	45.0	2
TGTAGCG	35	1.2101009E-7	45.0	1
CGTCCTA	20	7.029502E-4	45.0	7
CGATAAG	20	7.029502E-4	45.0	12