SRR2935884.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935884.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	468162
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGC	5286	1.129096338446948	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCG	4414	0.9428360268454082	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTC	4133	0.8828140686343615	No Hit
GCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	2447	0.522682319368082	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	1130	0.24136944049282086	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCT	1020	0.217873300267856	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	862	0.18412429885381554	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACGAAGGT	847	0.18092027973222943	No Hit
CTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGCT	792	0.169172209619747	Illumina Single End Adapter 1 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCT	734	0.15678333568294736	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTC	733	0.15656973440817495	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTA	679	0.14503526557046492	No Hit
TCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	475	0.10146060551689373	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	20	7.028997E-4	45.000004	1
GCGAACC	20	7.028997E-4	45.000004	33
TAGCGCG	30	2.1627347E-6	45.000004	1
GTTAGCG	35	1.2098644E-7	45.000004	1
CCTCATG	20	7.028997E-4	45.000004	34
ATAACGG	30	2.1627347E-6	45.000004	2
GCGTCGC	20	7.028997E-4	45.000004	3
TCGACAA	35	1.2098644E-7	45.000004	19
GCATCCG	20	7.028997E-4	45.000004	1
TCGTTCA	25	3.887251E-5	45.0	16
GTTACGT	25	3.887251E-5	45.0	23
CGCACGG	25	3.887251E-5	45.0	2
TAGTCGT	25	3.887251E-5	45.0	15
TTACGGG	125	0.0	44.999996	3
TACGGGC	70	0.0	41.785717	4
GGCGTGT	65	0.0	41.53846	8
CGGCGAA	60	3.6379788E-12	41.250004	31
TACGGCT	640	0.0	41.132816	7
CGGGAAC	105	0.0	40.714287	6
ATGGTTA	45	1.924127E-8	40.000004	5