SRR2935883.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935883.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	629468
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGC	10590	1.682373051529228	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG	8992	1.4285078828471025	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTC	7894	1.2540748695724009	No Hit
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	3595	0.5711171973793744	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCT	1964	0.3120095064403592	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATTACCGT	1657	0.2632381630202012	No Hit
GAACTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCT	1534	0.24369785278997502	No Hit
CCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	1495	0.23750214466819597	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTC	1420	0.22558732135708248	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATTACCGTCGTA	1387	0.22034479910019253	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1231	0.19556196661307643	No Hit
CTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGCT	1146	0.18205850019381445	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	120	0.0	45.000004	4
TCTAGCG	30	2.1639316E-6	45.000004	1
CGAATAT	30	2.1639316E-6	45.000004	14
TAGTACG	30	2.1639316E-6	45.000004	1
ACGTTAG	25	3.8887883E-5	45.0	1
TAGGACG	20	7.030853E-4	45.0	1
TCGACGG	55	1.8189894E-12	45.0	2
ATCGACG	25	3.8887883E-5	45.0	1
ACGGTAG	20	7.030853E-4	45.0	1
TCACGTA	25	3.8887883E-5	45.0	13
CGTATGG	95	0.0	42.63158	2
TACGGCT	1245	0.0	42.108433	7
CGACGGT	60	3.6379788E-12	41.250004	28
GCGATAA	60	3.6379788E-12	41.250004	9
CCGATGA	410	0.0	40.60976	18
ACGGCTG	1300	0.0	40.326923	8
CGTTAGG	140	0.0	40.178574	2
GCGTATG	90	0.0	40.0	1
GCGTTAG	85	0.0	39.705883	1
ATAGCGG	80	0.0	39.375	2