SRR2935882.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935882.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	638733
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	2277	0.35648698282380903	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	2272	0.3557041831250303	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC	2083	0.3261143545111964	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC	2046	0.3203216367402342	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG	1837	0.2876006093312855	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT	1109	0.1736249731891103	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1093	0.17112001415301856	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	687	0.10755667861219007	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCA	20	7.0309296E-4	45.0	30
CAACGAT	20	7.0309296E-4	45.0	13
TCCGAAC	25	3.8888516E-5	45.0	17
GCCGATA	40	6.8066583E-9	45.0	9
CTACGCG	20	7.0309296E-4	45.0	1
AACGATT	25	3.8888516E-5	45.0	14
CCGACTC	20	7.0309296E-4	45.0	35
CGCAACA	20	7.0309296E-4	45.0	26
GTCGGTC	20	7.0309296E-4	45.0	31
ACTACGG	30	2.1639808E-6	44.999996	2
ACGGGTC	70	0.0	41.785713	5
CGTTTTT	665	0.0	40.263157	1
TACACGG	45	1.925946E-8	40.000004	2
CGTTAGG	85	0.0	39.705883	2
CTACGGG	125	0.0	39.6	3
AGCGACT	285	0.0	39.473686	19
ACGGGAC	160	0.0	39.375	5
ACAACGA	300	0.0	39.000004	13
CAACGAG	300	0.0	39.000004	14
CACACCG	75	0.0	39.000004	17