SRR2935881.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935881.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	693606
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	2263	0.32626592042168034	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTC	1976	0.284887962330199	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGC	1917	0.2763816921998945	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCG	1598	0.23039016386824798	No Hit
CCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	1567	0.22592076769808797	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1321	0.19045394647681824	No Hit
CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT	1190	0.17156714330614212	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	20	7.031349E-4	45.000004	1
AATCCGC	20	7.031349E-4	45.000004	37
TTTCGCG	20	7.031349E-4	45.000004	1
CACGCAG	20	7.031349E-4	45.000004	19
AACGGTT	20	7.031349E-4	45.000004	26
CCCGTCG	20	7.031349E-4	45.000004	18
TCGACAA	20	7.031349E-4	45.000004	19
GTACGCG	20	7.031349E-4	45.000004	1
CCGCTAT	25	3.8892E-5	45.0	42
TCATGCG	25	3.8892E-5	45.0	1
GCGATTT	45	3.8380676E-10	45.0	9
TACACGA	25	3.8892E-5	45.0	37
CCCGCAT	25	3.8892E-5	45.0	23
CGTAAGG	165	0.0	42.272728	2
ATGCGAG	65	0.0	41.53846	1
CGATGCG	60	3.6379788E-12	41.249996	10
CTCGCCT	50	1.0804797E-9	40.5	27
TATCGGG	50	1.0804797E-9	40.5	3
CACTCGC	40	3.4555705E-7	39.375004	25
GCGTAAG	80	0.0	39.375004	1