SRR2935880.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935880.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	678011
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGC	3303	0.4871602378132508	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTC	3032	0.44719038481676554	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCG	2772	0.40884292437733305	No Hit
GCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	2420	0.35692636255164	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	1533	0.2261025263601918	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1214	0.17905314220565743	No Hit
CTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGCT	1163	0.17153114035023032	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCG	20	7.0312363E-4	45.000004	1
ATTACGG	25	3.8891063E-5	45.000004	2
TAGCACG	20	7.0312363E-4	45.000004	1
CCGAATC	20	7.0312363E-4	45.000004	13
GCGTAAG	25	3.8891063E-5	45.000004	1
CTAATCG	20	7.0312363E-4	45.000004	44
CGTATGG	55	1.8189894E-12	45.0	2
GTTAACG	30	2.164179E-6	44.999996	1
CCCCGAT	60	3.6379788E-12	41.249996	14
TGTTGCG	50	1.0804797E-9	40.500004	1
TGTACCG	50	1.0804797E-9	40.500004	1
CTCACGA	45	1.9263098E-8	40.0	24
AACCCGC	40	3.455425E-7	39.375004	21
CCCATTA	110	0.0	38.863636	33
CATACGA	105	0.0	38.57143	18
GTTAGCG	35	6.244498E-6	38.571426	1
ACGATAT	35	6.244498E-6	38.571426	23
TACGATA	35	6.244498E-6	38.571426	22
TAGGCCG	35	6.244498E-6	38.571426	1
CGATATA	35	6.244498E-6	38.571426	24