SRR2935879.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935879.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	739274
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	3123	0.42244147636735496	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTC	2874	0.38875978324680704	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGC	2261	0.30584059496208443	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	2090	0.282709793662431	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCG	1969	0.2663423845556586	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1947	0.263366491990791	No Hit
CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT	1524	0.20614819403901669	No Hit
TCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	1017	0.13756739720320207	No Hit
CGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTG	866	0.11714195278070107	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT	779	0.1053736503650879	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTT	760	0.10280356133179308	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCACG	20	7.031651E-4	45.000004	31
CGTATCA	20	7.031651E-4	45.000004	11
ACCGCTT	20	7.031651E-4	45.000004	16
CGCCTAA	20	7.031651E-4	45.000004	37
TCGGAGC	20	7.031651E-4	45.000004	40
TAGACCG	25	3.8894505E-5	45.0	1
AAGCGTA	25	3.8894505E-5	45.0	29
ACTACGG	25	3.8894505E-5	45.0	2
CGTACAA	25	3.8894505E-5	45.0	32
ACGGTGC	25	3.8894505E-5	45.0	27
TAGCGCG	30	2.1644464E-6	44.999996	1
TTCCGCG	30	2.1644464E-6	44.999996	1
TCGAGCG	30	2.1644464E-6	44.999996	1
GTCGAAG	65	0.0	41.538464	1
CGTTTTT	1550	0.0	41.225807	1
ATTTACG	45	1.9266736E-8	40.0	1
ATTACCG	45	1.9266736E-8	40.0	1
GCGGCTA	45	1.9266736E-8	40.0	24
CCGCGAA	45	1.9266736E-8	40.0	26
TATCCGG	45	1.9266736E-8	40.0	2