SRR2935876.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935876.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	915408
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4600	0.5025081712198277	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTC	4117	0.44974481324174576	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGC	4110	0.44898012689423733	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCG	3594	0.3926118189921871	No Hit
GCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC	1782	0.19466729589428974	TruSeq Adapter, Index 21 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC	996	0.10880394315977138	TruSeq Adapter, Index 21 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTG	980	0.10705608865118069	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAG	30	2.1650158E-6	45.000004	1
TAGTGCG	30	2.1650158E-6	45.000004	1
TAGTACG	30	2.1650158E-6	45.000004	1
CGACGGT	20	7.0325326E-4	45.0	28
AATGCGC	20	7.0325326E-4	45.0	17
CAATGCG	35	1.2115743E-7	45.0	1
TAGGCCG	20	7.0325326E-4	45.0	1
CGTTTTT	2520	0.0	42.053574	1
CGAATAT	110	0.0	40.909092	14
CGTTATT	225	0.0	40.0	1
ACGGGCG	165	0.0	39.545452	5
AGTAACG	40	3.4571895E-7	39.375	1
AATGCGG	110	0.0	38.863636	2
TATGCGG	105	0.0	38.57143	2
CGTAAGG	210	0.0	38.57143	2
CCGTAAG	30	1.1397403E-4	37.500004	1
TACGAAT	120	0.0	37.500004	12
TTACGGG	325	0.0	37.384617	3
AGTACGG	145	0.0	37.24138	2
TCGATGG	85	0.0	37.058823	2