Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935871.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 587677 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGC | 5156 | 0.8773526954432451 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG | 4398 | 0.7483702782310692 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC | 4266 | 0.7259089601941202 | No Hit |
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC | 2493 | 0.42421262019782974 | No Hit |
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC | 1481 | 0.2520091819145551 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1318 | 0.22427285736892885 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCT | 947 | 0.16114294076508012 | No Hit |
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT | 844 | 0.14361630623624883 | No Hit |
GAACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCT | 755 | 0.12847193271133633 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCCTCAAAT | 740 | 0.1259195102071376 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTC | 697 | 0.11860256569510123 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTA | 631 | 0.1073719066766268 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTAGCG | 20 | 7.0304703E-4 | 45.0 | 1 |
CGCTAGT | 20 | 7.0304703E-4 | 45.0 | 16 |
CCATACG | 20 | 7.0304703E-4 | 45.0 | 2 |
TATAGCG | 20 | 7.0304703E-4 | 45.0 | 1 |
TAGGCCG | 20 | 7.0304703E-4 | 45.0 | 1 |
TCGAATT | 20 | 7.0304703E-4 | 45.0 | 41 |
TAACGGG | 115 | 0.0 | 41.086956 | 3 |
ACAACGG | 50 | 1.0804797E-9 | 40.5 | 2 |
TACGGCT | 650 | 0.0 | 40.5 | 7 |
GCGATAT | 50 | 1.0804797E-9 | 40.5 | 9 |
TAGCACG | 45 | 1.9255822E-8 | 40.000004 | 1 |
GGAACAC | 515 | 0.0 | 39.757282 | 8 |
GTTACGG | 40 | 3.45437E-7 | 39.375 | 2 |
TACGAAT | 40 | 3.45437E-7 | 39.375 | 12 |
CGAATAT | 40 | 3.45437E-7 | 39.375 | 14 |
GCTACGA | 40 | 3.45437E-7 | 39.375 | 10 |
AGGGAAC | 695 | 0.0 | 38.848923 | 6 |
CGTTTTT | 775 | 0.0 | 38.612904 | 1 |
CGTAAGG | 105 | 0.0 | 38.57143 | 2 |
GTTAGCG | 35 | 6.243079E-6 | 38.571426 | 1 |