FastQCFastQC Report
Sat 14 Jan 2017
SRR2935871.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935871.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences587677
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGC51560.8773526954432451No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG43980.7483702782310692No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC42660.7259089601941202No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC24930.42421262019782974No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC14810.2520091819145551No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13180.22427285736892885No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCT9470.16114294076508012No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT8440.14361630623624883No Hit
GAACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCT7550.12847193271133633No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCCTCAAAT7400.1259195102071376No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTC6970.11860256569510123No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTA6310.1073719066766268No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTAGCG207.0304703E-445.01
CGCTAGT207.0304703E-445.016
CCATACG207.0304703E-445.02
TATAGCG207.0304703E-445.01
TAGGCCG207.0304703E-445.01
TCGAATT207.0304703E-445.041
TAACGGG1150.041.0869563
ACAACGG501.0804797E-940.52
TACGGCT6500.040.57
GCGATAT501.0804797E-940.59
TAGCACG451.9255822E-840.0000041
GGAACAC5150.039.7572828
GTTACGG403.45437E-739.3752
TACGAAT403.45437E-739.37512
CGAATAT403.45437E-739.37514
GCTACGA403.45437E-739.37510
AGGGAAC6950.038.8489236
CGTTTTT7750.038.6129041
CGTAAGG1050.038.571432
GTTAGCG356.243079E-638.5714261