SRR2935871.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935871.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	587677
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGC	5156	0.8773526954432451	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG	4398	0.7483702782310692	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC	4266	0.7259089601941202	No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	2493	0.42421262019782974	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	1481	0.2520091819145551	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1318	0.22427285736892885	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCT	947	0.16114294076508012	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	844	0.14361630623624883	No Hit
GAACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCT	755	0.12847193271133633	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCCTCAAAT	740	0.1259195102071376	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTC	697	0.11860256569510123	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTA	631	0.1073719066766268	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	20	7.0304703E-4	45.0	1
CGCTAGT	20	7.0304703E-4	45.0	16
CCATACG	20	7.0304703E-4	45.0	2
TATAGCG	20	7.0304703E-4	45.0	1
TAGGCCG	20	7.0304703E-4	45.0	1
TCGAATT	20	7.0304703E-4	45.0	41
TAACGGG	115	0.0	41.086956	3
ACAACGG	50	1.0804797E-9	40.5	2
TACGGCT	650	0.0	40.5	7
GCGATAT	50	1.0804797E-9	40.5	9
TAGCACG	45	1.9255822E-8	40.000004	1
GGAACAC	515	0.0	39.757282	8
GTTACGG	40	3.45437E-7	39.375	2
TACGAAT	40	3.45437E-7	39.375	12
CGAATAT	40	3.45437E-7	39.375	14
GCTACGA	40	3.45437E-7	39.375	10
AGGGAAC	695	0.0	38.848923	6
CGTTTTT	775	0.0	38.612904	1
CGTAAGG	105	0.0	38.57143	2
GTTAGCG	35	6.243079E-6	38.571426	1