Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935869.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 309928 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGC | 1923 | 0.620466689037454 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC | 1697 | 0.5475465269352882 | TruSeq Adapter, Index 23 (95% over 24bp) |
GAATCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTC | 1683 | 0.5430293487519682 | TruSeq Adapter, Index 23 (95% over 21bp) |
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCG | 1676 | 0.5407707596603082 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC | 1511 | 0.48753258821403683 | TruSeq Adapter, Index 23 (95% over 24bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 884 | 0.2852275367182055 | No Hit |
CTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGCT | 842 | 0.2716760021682455 | TruSeq Adapter, Index 20 (95% over 23bp) |
ACTTTTTTTTCTTTTAATTTTTGTTTTATTTTTTGTAACCACTGTCTTAAT | 507 | 0.16358638135308845 | No Hit |
TCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC | 452 | 0.14584032420433135 | TruSeq Adapter, Index 23 (95% over 24bp) |
GAATGACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCT | 397 | 0.1280942670555742 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTCTTGT | 331 | 0.10679899847706564 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTG | 327 | 0.10550837613897421 | TruSeq Adapter, Index 20 (95% over 21bp) |
GAACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCT | 320 | 0.10324978704731422 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTTACG | 35 | 1.2080818E-7 | 45.000004 | 21 |
GGTATGC | 35 | 1.2080818E-7 | 45.000004 | 8 |
TCTGATC | 20 | 7.025304E-4 | 45.0 | 43 |
GTCGCTC | 20 | 7.025304E-4 | 45.0 | 24 |
CGAACGG | 20 | 7.025304E-4 | 45.0 | 2 |
CGAAACT | 20 | 7.025304E-4 | 45.0 | 19 |
GCGCGAC | 40 | 6.7866495E-9 | 45.0 | 9 |
ATTACGG | 20 | 7.025304E-4 | 45.0 | 2 |
TACGGGT | 20 | 7.025304E-4 | 45.0 | 4 |
CGCGACC | 40 | 6.7866495E-9 | 45.0 | 10 |
ATCGTGA | 20 | 7.025304E-4 | 45.0 | 30 |
GTAATCG | 20 | 7.025304E-4 | 45.0 | 13 |
ATTCCCG | 20 | 7.025304E-4 | 45.0 | 13 |
TTCCCGC | 20 | 7.025304E-4 | 45.0 | 14 |
CCGTAAC | 20 | 7.025304E-4 | 45.0 | 36 |
CTAGTAG | 25 | 3.884191E-5 | 45.0 | 1 |
TGCGAAG | 40 | 6.7866495E-9 | 45.0 | 1 |
ACGTGTG | 25 | 3.884191E-5 | 45.0 | 40 |
ACTACGG | 20 | 7.025304E-4 | 45.0 | 2 |
CGGGATC | 40 | 6.7866495E-9 | 45.0 | 6 |