FastQCFastQC Report
Sat 14 Jan 2017
SRR2935869.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935869.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences309928
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGC19230.620466689037454No Hit
GCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC16970.5475465269352882TruSeq Adapter, Index 23 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTC16830.5430293487519682TruSeq Adapter, Index 23 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCG16760.5407707596603082No Hit
CCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC15110.48753258821403683TruSeq Adapter, Index 23 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8840.2852275367182055No Hit
CTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGCT8420.2716760021682455TruSeq Adapter, Index 20 (95% over 23bp)
ACTTTTTTTTCTTTTAATTTTTGTTTTATTTTTTGTAACCACTGTCTTAAT5070.16358638135308845No Hit
TCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC4520.14584032420433135TruSeq Adapter, Index 23 (95% over 24bp)
GAATGACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCT3970.1280942670555742No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTCTTGT3310.10679899847706564No Hit
CGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTG3270.10550837613897421TruSeq Adapter, Index 20 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCT3200.10324978704731422No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTTACG351.2080818E-745.00000421
GGTATGC351.2080818E-745.0000048
TCTGATC207.025304E-445.043
GTCGCTC207.025304E-445.024
CGAACGG207.025304E-445.02
CGAAACT207.025304E-445.019
GCGCGAC406.7866495E-945.09
ATTACGG207.025304E-445.02
TACGGGT207.025304E-445.04
CGCGACC406.7866495E-945.010
ATCGTGA207.025304E-445.030
GTAATCG207.025304E-445.013
ATTCCCG207.025304E-445.013
TTCCCGC207.025304E-445.014
CCGTAAC207.025304E-445.036
CTAGTAG253.884191E-545.01
TGCGAAG406.7866495E-945.01
ACGTGTG253.884191E-545.040
ACTACGG207.025304E-445.02
CGGGATC406.7866495E-945.06